Søren Michael Karst

  1. 2017
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    Read error correction of oxford nanopore reads using molecular tagging. / Kirkegaard, Rasmus Hansen; Karst, Søren Michael; Dueholm, Morten Simonsen; Nielsen, Per Halkjær; Albertsen, Mads.

    2017. Abstract from American society for microbiology, New Orleans, USA.

    Publikation: ForskningKonferenceabstrakt til konference

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  8. Accepteret/In press

    The role of inoculum and reactor configuration for microbial community composition and dynamics in mainstream partial nitritation anammox reactors. / Agrawal, Shelesh; Karst, Søren M.; Gilbert, Eva M.; Horn, Harald; Nielsen, Per H.; Lackner, Susanne.

    I: MicrobiologyOpen, 2017.

    Publikation: Forskning - peer reviewTidsskriftartikel

  9. 2016
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    A GAO hiding among the PAO : The role of the Propionivibrio spp. in biological phosphorus removal. / McIlroy, Simon Jon; Albertsen, Mads; Stokholm-Bjerregaard, Mikkel; Karst, Søren Michael; Nielsen, Per Halkjær.

    2016. Poster session presented at Microbial Ecology & Water Engineering and Biofilm IWA Specialist Conference, Copenhagen, Danmark.

    Publikation: Forskning - peer reviewPoster

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    MiDAS : A curated database for the microorganisms of activated sludge and anaerobic digesters. / McIlroy, Simon Jon; Kirkegaard, Rasmus Hansen; McIlroy, Bianca; Nierychlo, Marta; Kristensen, Jannie Munk; Karst, Søren Michael; Albertsen, Mads; Nielsen, Per Halkjær.

    2016. Poster session presented at Microbial Ecology & Water Engineering and Biofilm IWA Specialist Conference, Copenhagen, Danmark.

    Publikation: Forskning - peer reviewPoster

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    Molecular methods. / Karst, Søren Michael; Albertsen, Mads; Kirkegaard, Rasmus Hansen; Dueholm, Morten Simonsen; Nielsen, Per Halkjær.

    Experimental methods in wastewater treatment. red. / Mark C. M. van Loosdrecht; Per Halkjær Nielsen; Carlos M. Lopez-Vazquez; Damir Brdjanovic. IWA Publishing Company, 2016. s. 285-324 (Water Intelligence Online).

    Publikation: Forskning - peer reviewBidrag til bog/antologi

  22. Udgivet

    New DNA-based Approaches for the Study of Microbial Communities. / Karst, Søren Michael.

    Aalborg Universitetsforlag, 2016. 37 s. (Ph.d.-serien for Det Teknisk-Naturvidenskabelige Fakultet, Aalborg Universitet).

    Publikation: ForskningPh.d.-afhandling

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  25. 2015
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    Correlating the microbial community composition of anaerobic digesters to process parameters. / Kirkegaard, Rasmus Hansen; McIlroy, Simon Jon; Larsen, Poul; Karst, Søren Michael; Albertsen, Mads; Nielsen, Per Halkjær.

    2015. Abstract from 14th World Congress on Anaerobic Digestion, Viña del Mar, .

    Publikation: Forskning - peer reviewKonferenceabstrakt til konference

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    Cyanate as energy source for nitrifiers. / Palatinszky, Marton; Herbold, Craig; Jehmlich, Nico; Pogoda, Mario; Han, Ping; von Bergen, Martin; Lagkouvardos, Ilias; Karst, Søren Michael; Galushko, Alexander; Koch, Hanna; Berry, David; Daims, Holger; Wagner, Michael.

    I: Nature, Vol. 524, 06.08.2015, s. 105-108.

    Publikation: Forskning - peer reviewLetter

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    Survival and activity of individual bioaugmentation strains. / Dueholm, Morten Simonsen; G. Marquesa, Irina; Karst, Søren Michael; D'Imperiob, Seth; Tale, V. P.; Lewis, Derrick; Nielsen, Per Halkjær; Nielsen, Jeppe Lund.

    I: Bioresource Technology, Vol. 186, 01.06.2015, s. 192-199.

    Publikation: Forskning - peer reviewTidsskriftartikel

  34. 2014
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    Complete Genome Sequence of Actinobaculum schaalii Strain CCUG 27420. / Kristiansen, Rikke; Dueholm, Morten Simonsen; Bank, Steffen; Nielsen, Per Halkjær; Karst, Søren M; Cattoir, Vincent; Lienhard, Reto; Grisold, Andrea J; Olsen, Anne Buchhave; Reinhard, Mark; Søby, Karen Marie; Christensen, Jens Jørgen; Prag, Jørgen; Thomsen, Trine R.

    I: Genome Announcements, Vol. 2, Nr. 5, e00880-14, 2014.

    Publikation: ForskningTidsskriftartikel

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    Low Temperature Partial Nitritation/Anammox in a Moving Bed Biofilm Reactor treating low strength Wastewater. / Gilbert, Eva; Agrawal, Shelesh; Karst, Søren Michael; Horn, Harald; Nielsen, Per Halkjær; Lackner, Susanne.

    I: Environmental Science & Technology (Washington), Vol. 48, Nr. 15, 01.07.2014, s. 8784–8792.

    Publikation: Forskning - peer reviewTidsskriftartikel

  39. Udgivet

    Mixed Culture PHA Production With Alternating Feedstocks : Process Robustness And Population Dynamics. / Oliveira, C.S.S.; Duque, A.F.; Carvalho, Gilda; Gouveia, A.V.; Karst, Søren Michael; Nielsen, Per Halkjær; Reis, M.A.M.

    2014. Poster session presented at EcoSTP 2014, Verona, Italien.

    Publikation: Forskning - peer reviewPoster

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    Obtaining representative community profiles of anaerobic digesters through optimisation of 16S rRNA amplicon sequencing protocols. / Kirkegaard, Rasmus Hansen; McIlroy, Simon Jon; Karst, Søren Michael; Albertsen, Mads; Nielsen, Per Halkjær.

    2014. Poster session presented at 2nd International Conference on Biogas Microbiology ICBM, Uppsala, Sverige.

    Publikation: Forskning - peer reviewPoster

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    Possibilities and obstacles in recovery of genomes from elusive microbes in complex metagenomes. / Karst, Søren Michael; Albertsen, Mads; Nielsen, Jeppe Lund; Nielsen, Kåre Lehmann; Nielsen, Per Halkjær.

    2014. Poster session presented at 15th International Symposium on Microbial Ecology, Seoul, Sydkorea.

    Publikation: Forskning - peer reviewPoster

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    Using Short-Term Enrichments and Metagenomics to Obtain Genomes from uncultured Activated Sludge Microorganisms. / Karst, Søren Michael; Nielsen, Per Halkjær; Albertsen, Mads; Nielsen, Jeppe Lund; Nielsen, Kåre Lehmann.

    2014. Abstract from Microbial Ecology and Water Engineering 2013, Ann Arbor, Michigan, USA.

    Publikation: Forskning - peer reviewKonferenceabstrakt til konference

  47. 2013
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    Back to basics – the influence of DNA extraction and primer choice on phylogenetic analysis in activated sludge communities. / Albertsen, Mads; Karst, Søren Michael; Ziegler, Anja Sloth; Nielsen, Kåre Lehmann; Nielsen, Per Halkjær.

    2013. Poster session presented at Microbial Ecology and Water Engineering 2013, Ann Arbor, Michigan, USA.

    Publikation: Forskning - peer reviewPoster

  49. Udgivet

    DNA Extraction and Primer Selection. / Karst, Søren Michael; Nielsen, Per Halkjær; Albertsen, Mads; Ziegler, Anja Sloth.

    2013. Abstract from Microbial Ecology and Water Engineering 2013, Ann Arbor, Michigan, USA.

    Publikation: ForskningKonferenceabstrakt til konference

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  51. 2012
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    Acquiring Reference Genomes from Uncultured Microbes by Micromanipulation and Low-complexity Metagenomics. / Karst, Søren Michael; Albertsen, Mads; Nielsen, Jeppe Lund; Nielsen, Kåre Lehmann; Nielsen, Per Halkjær.

    2012. Poster session presented at 14th International Symposium on Microbial Ecology, Copenhagen, Danmark.

    Publikation: Forskning - peer reviewPoster

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    Genomic investigation of the lipid accumulating filamentous bacterium Candidatus ‘Microthrix parvicella’. / McIlroy, Simon Jon; Kristiansen, Rikke; Albertsen, Mads; Karst, Søren Michael; Rossetti, Simona; Nielsen, Jeppe Lund; Tandoi, Valter; Seviour, Robert; Nielsen, Per Halkjær.

    2012. Poster session presented at 14th International Symposium on Microbial Ecology, Copenhagen, Danmark.

    Publikation: ForskningPoster