• Fredrik Bajers Vej 7H

    9220 Aalborg

    Danmark

Publikationer 1995 2019

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2015
342 Citationer (Scopus)

Complete nitrification by a single microorganism

van Kessel, M. A. H. J., Speth, D. R., Albertsen, M., Nielsen, P. H., Op den Camp, H. J. M., Kartal, B., Jetten, M. S. M. & Lücker, S., 26 nov. 2015, I : Nature. 528, 7583, s. 555-559 5 s.

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nitrification
ammonia
microorganism
nitrate
nitrite
442 Citationer (Scopus)

Complete nitrification by Nitrospira bacteria

Daims, H., Lebedeva, E. V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R. H., von Bergen, M., Rattei, T., Bendinger, B., Nielsen, P. H. & Wagner, M., 24 dec. 2015, I : Nature. 528, 7583, s. 504-509 5 s.

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nitrification
ammonia
nitrite
bacterium
oxidation
12 Citationer (Scopus)

Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data

Tobalina, L., Bargiela, R., Pey, J., Herbst, F-A., Lores, I., Rojo, D., Barbas, C., Peláez, A. I., Sánchez, J., von Bergen, M., Seifert, J., Ferrer, M. & Planes, F. J., 1 jun. 2015, I : Bioinformatics. 31, 11, s. 1771-1779 9 s.

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Åben adgang
Metabolic Network
Naphthalene
Metabolic Networks and Pathways
Functional analysis
Metabolomics
4 Citationer (Scopus)

Contrasting Water-Use Efficiency (WUE) Responses of a Potato Mapping Population and Capability of Modified Ball-Berry Model to Predict Stomatal Conductance and WUE Measured at Different Environmental Conditions

Kaminski, K. P., Kørup, K., Kristensen, K., Nielsen, K. L., Liu, F., Topbjerg, H. B., Kirk, H. G. & Andersen, M. N., apr. 2015, I : Journal of Agronomy and Crop Science. 201, 2, s. 81-94 13 s.

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water use efficiency
stomatal conductance
small fruits
potatoes
environmental factors
10 Citationer (Scopus)

Cytosolic glutamine synthetase is important for photosynthetic efficiency and water use efficiency in potato as revealed by high-throughput sequencing QTL analysis

Kaminski, K. P., Sørensen, K. K., Andersen, M. N., Sønderkær, M., Andersen, M. S., Kirk, H. G. & Nielsen, K. L., 2015, I : Theoretical and Applied Genetics. 128, 11, s. 2143-2153

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Åben adgang
16 Citationer (Scopus)

Degradation of PPCPs in activated sludge from different WWTPs in Denmark

Chen, X., Vollertsen, J., Nielsen, J. L., Dall, A. G. & Bester, K., 2015, I : Ecotoxicology. 24, 10, s. 2073-2080 8 s.

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Pharmaceutical Services
Denmark
Waste Water
Sewage
Wastewater treatment
24 Citationer (Scopus)

Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds

Pöritz, M., Schiffmann, C. L., Hause, G., Heinemann, U., Seifert, J., Jehmlich, N., von Bergen, M., Nijenhuis, I. & Lechner, U., 2015, I : Applied and Environmental Microbiology. 81, 2, s. 587-596 10 s.

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Åben adgang
Tetrachloroethylene
dioxins
dioxin
aromatic compounds
tetrachloroethylene
15 Citationer (Scopus)

De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster

Kumar, A., Henrissat, B., Arvas, M., Fahad Syed, M., Thieme, N., Benz, J. P., Sørensen, J. L., Record, E., Pöggeler, S. & Kempken, F., 2015, I : P L o S One. 10, 10, e0140398.

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Åben adgang
80 Citationer (Scopus)

Dewatering in biological wastewater treatment: a review

Christensen, M. L., Keiding, K., Nielsen, P. H. & Jørgensen, M. K., 2015, I : Water Research. 82, s. 14-24 11 s.

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20 Citationer (Scopus)

Di-(2-ethylhexyl)-phthalate (DEHP) causes impaired adipocyte function and alters serum metabolites

Klöting, N., Hesselbarth, N., Gericke, M., Kunath, A., Biemann, R., Chakaroun, R., Kosacka, J., Kovacs, P., Kern, M., Stumvoll, M., Fischer, B., Rolle-Kampczyk, U., Feltens, R., Otto, W., Wissenbach, D. K., Von Bergen, M. & Blüher, M., 1 dec. 2015, I : PLoS ONE. 10, 12, e0143190.

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Åben adgang
phthalates
Metabolites
adipocytes
Adipocytes
metabolites
24 Citationer (Scopus)

Effect of particulate organic substrate on aerobic granulation and operating conditions of sequencing batch reactors

Wagner, J., Weissbrodt, D. G., Manguin, V., Ribeiro da Costa, R. H., Morgenroth, E. & Derlon, N., 1 aug. 2015, I : Water Research. 85, s. 158-166 9 s.

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Granulation
Batch reactors
Wastewater
Effluents
wastewater
4 Citationer (Scopus)

Effects of ceftiofur treatment on the susceptibility of commensal porcine E.coli--comparison between treated and untreated animals housed in the same stable

Beyer, A., Baumann, S., Scherz, G., Stahl, J., von Bergen, M., Friese, A., Roesler, U., Kietzmann, M. & Honscha, W., 15 okt. 2015, I : B M C Veterinary Research. 11, 265.

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Åben adgang
ceftiofur
Swine
Escherichia coli
swine
animals
8 Citationer (Scopus)

Endogenous metabolites and inflammasome activity in early childhood and links to respiratory diseases

Herberth, G., Offenberg, K., Rolle-Kampczyk, U., Bauer, M., Otto, W., Röder, S., Grützmann, K., Sack, U., Simon, J. C., Borte, M., Von Bergen, M. & Lehmann, I., 1 aug. 2015, I : Journal of Allergy and Clinical Immunology. 136, 2, s. 495-497 3 s.

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Åben adgang
4 Citationer (Scopus)

Evidence for Restricted Reactivity of ADAMDEC1 with Protein Substrates and Endogenous Inhibitors

Lund, J., Troeberg, L., Kjeldal, H., Olsen, O. H., Nagase, H., Sørensen, E. S., Stennicke, H. R., Petersen, H. H. & Overgaard, M. T., 6 jan. 2015, I : Journal of Biological Chemistry. 290, 10, s. 6620-6629 10 s.

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Metalloproteases
Substrates
Proteins
Tissue
Zinc
3 Citationer (Scopus)

Exopolysaccharides are partly growth associated products in Microcystis flos-aquae

Svane, R. & Eriksen, N. T., 2015, I : Journal of Applied Phycology. 27, 1, s. 163-170 8 s.

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123 Citationer (Scopus)

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

Koch, H., Lücker, S., Albertsen, M., Kitzinger, K., Herbold, C., Spieck, E., Nielsen, P. H., Wagner, M. & Daims, H., 8 sep. 2015, I : Proceedings of the National Academy of Science of the United States of America. 112, 36, s. 11371-11376 6 s.

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Åben adgang
Nitrospira moscoviensis
Nitrospira (Genus)
nitrites
urease
oxidants
1 Citation (Scopus)

Expression profiling and functional analyses of BghPTR2, a peptide transporter from Blumeria graminis f. sp. hordei

Droce, A., Holm, K. B., Olsson, S., J N Frandsen, R., Søndergaard, T., Sørensen, J. L. & Giese, H., 2015, I : Fungal Biology. 119, 7, s. 551-559 9 s.

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7 Citationer (Scopus)

Factors influencing production of fusaristatin A in Fusarium graminearum

Hegge, A., Lønborg, R., Nielsen, D. M. & Sørensen, J. L., 2015, I : Metabolites. 5, 2, s. 184-191 8 s.

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Åben adgang
4 Citationer (Scopus)

Formation of nanoparticles by cooperative inclusion between (S)-camptothecin-modified dextrans and β-cyclodextrin polymers

Nielsen, T. T., Amiel, C., Duroux, L., Larsen, K. L., Städe, L. W., Wimmer, R. & Wintgens, V., 2015, I : Beilstein Journal of Organic Chemistry. 11, s. 147-154 8 s.

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Åben adgang
Camptothecin
Dextrans
Nanoparticles
Cyclodextrins
Alkynes
34 Citationer (Scopus)

Functional Amyloids Keep Quorum-sensing Molecules in Check

Seviour, T., Hansen, S. H., Yang, L., Yau, Y. H., Wang, V. B., Stenvang, M. R., Christiansen, G., Marsili, E., Givskov, M., Chen, Y., Otzen, D. E., Nielsen, P. H., Geifman-Shochat, S., Kjelleberg, S. & Dueholm, M. S., 6 mar. 2015, I : Journal of Biological Chemistry. 290, 10, s. 6457-6469 13 s.

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41 Citationer (Scopus)

Functional bacterial amyloid increases Pseudomonas biofilm hydrophobicity and stiffness

Zeng, G., Vad, B. S., Dueholm, M. S., Christiansen, G., Nilsson, M., Tolker-Nielsen, T., Nielsen, P. H., Meyer, R. L. & Otzen, D., 2015, I : Frontiers in Microbiology. 6, 1099.

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Åben adgang
11 Citationer (Scopus)

Functional responses and adaptation of mesophilic microbial communities to psychrophilic anaerobic digestion

Gunnigle, E., Nielsen, J. L., Fuszard, M., Botting, C. H., Sheahan, J., O'Flaherty, V. & Abram, F., dec. 2015, I : FEMS Microbiology Ecology. 91, 12

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functional response
Digestion
microbial community
Temperature
methanogenesis
17 Citationer (Scopus)

Genome and secretome analyses provide insights into keratin decomposition by novel proteases from the non-pathogenic fungus Onygena corvina

Yuhong, H., Busk, P. K., Herbst, F-A. & Lange, L., 16 jul. 2015, I : Applied Microbiology and Biotechnology. 99, 22, s. 9635-9649 14 s.

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Åben adgang
Keratins
Peptide Hydrolases
Fungi
Genome
Feathers
11 Citationer (Scopus)

High metabolic in vivo stability and bioavailability of a palmitoylated ghrelin receptor ligand assessed by mass spectrometry

Kostelnik, K. B., Els-Heindl, S., Kloting, N., Baumann, S., von Bergen, M. & Beck-Sickinger, A. G., 2015, I : Bioorganic & Medicinal Chemistry. 23, 14, s. 3925–3932

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5 Citationer (Scopus)
273 Downloads (Pure)

High quality draft genome sequence of Meganema perideroedes str. Gr1T and a proposal for its reclassification to the family Meganemaceae fam. nov.

McIlroy, S. J., Lapidus, A., Thomsen, T. R., Han, J., Haynes, M., Lobos, E., Huntemann, M., Pati, A., Ivanova, N. N., Markowitz, V., Verbarg, S., Woyke, T., Klenk, H-P., Kyrpides, N. & Nielsen, P. H., 2015, I : Standards in Genomic Sciences. 10, s. 1-8 8 s., 23.

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Åben adgang
Fil
Genome
Sewage
Microbial Genome
Encyclopedias
Waste Water
16 Citationer (Scopus)

Identification and overexpression of the scopularide biosynthetic gene cluster in Scopulariopsis brevicaulis

Lukassen, M. B., Saei, W., Søndergaard, T. E., Tamminen, A., Kumar, A., Kempken, F., Wiebe, M. G. & Sørensen, J. L., 2015, I : Marine Drugs. 13, 7, s. 4331-4343 13 s.

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Åben adgang
17 Citationer (Scopus)

Identification of Putative Genes Involved in Bisphenol A Degradation Using Differential Protein Abundance Analysis of Sphingobium sp. BiD32

Zhou, N. A., Kjeldal, H., Gough, H. L. & Nielsen, J. L., 20 okt. 2015, I : Environmental Science and Technology. 49, 20, s. 12231-12241 11 s.

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Genes
Degradation
degradation
protein
gene
19 Citationer (Scopus)

Identification of Triclosan-O-Sulfate and other transformation products of Triclosan formed by activated sludge

Chen, X., Casas, M. E., Nielsen, J. L., Wimmer, R. & Bester, K., 1 feb. 2015, I : Science of the Total Environment. 505C, s. 39-46 8 s.

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Triclosan
Sulfates
activated sludge
sulfate
Derivatives
5 Citationer (Scopus)

Integration of conventional quantitative and phospho-proteomics reveals new elements in activated Jurkat T-cell receptor pathway maintenance

Jouy, F., Müller, S. A., Wagner, J., Otto, W., von Bergen, M. & Tomm, J. M., 1 jan. 2015, I : Proteomics. 15, 1, s. 25-33 9 s.

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Phosphopeptides
Jurkat Cells
T-Cell Antigen Receptor
Proteomics
T-cells
12 Citationer (Scopus)

Intracellular Accumulation of Glycine in Polyphosphate-Accumulating Organisms in Activated Sludge, a Novel Storage Mechanism under Dynamic Anaerobic-Aerobic Conditions

Nguyen, H. T. T., Kristiansen, R., Vestergaard, M., Wimmer, R. & Nielsen, P. H., jul. 2015, I : Applied and Environmental Microbiology. 81, 14, s. 4809-4818 10 s.

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Polyphosphates
polyphosphates
activated sludge
aerobic conditions
Sewage
8 Citationer (Scopus)

Label-free Quantification Reveals Major Proteomic Changes in Pseudomonas putida F1 During the Exponential Growth Phase

Herbst, F-A., Danielsen, H. N., Wimmer, R., Nielsen, P. H. & Dueholm, M. S., sep. 2015, I : Proteomics. 15, 18, s. 3244-3252 8 s.

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Pseudomonas putida
Proteomics
Labels
Proteome
Growth
80 Citationer (Scopus)

Limited dissemination of the wastewater treatment plant core resistome

Munck, C., Albertsen, M., Telke, A., Ellabaan, M., Nielsen, P. H. & Sommer, M. O. A., 21 aug. 2015, I : Nature Communications. 6, 10 s., 8452.

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Åben adgang
Waste Water
Wastewater treatment
genes
Genes
Metagenomics
17 Citationer (Scopus)

Major Proteomic Changes Associated with Amyloid-Induced Biofilm Formation in Pseudomonas aeruginosa PAO1

Herbst, F-A., Søndergaard, M. T., Kjeldal, H., Stensballe, A., Nielsen, P. H. & Dueholm, M. S., 2015, I : Journal of Proteome Research. 14, 1, s. 72-81 10 s.

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Biofilms
Amyloid
Proteomics
Pseudomonas aeruginosa
Pseudomonas
23 Citationer (Scopus)

MetaProSIP: Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics

Sachsenberg, T., Herbst, F-A., Taubert, M., Kermer, R., Jehmlich, N., von Bergen, M., Seifert, J. & Kohlbacher, O., 2015, I : Journal of Proteome Research. 14, 2, s. 619-627 9 s.

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Isotopes
Proteins
Labeling
Fluxes
Carbon Cycle
13 Citationer (Scopus)

Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation

Bargiela, R., Herbst, F-A., Martínez-Martínez, M., Seifert, J., Rojo, D., Cappello, S., Genovese, M., Crisafi, F., Denaro, R., Chernikova, T. N., Barbas, C., von Bergen, M., Yakimov, M. M., Ferrer, M. & Golyshin, P. N., okt. 2015, I : Proteomics. 15, 20, s. 3508-3520 12 s.

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Åben adgang
Metabolomics
Petroleum
Sicily
Degradation
Proteome
38 Citationer (Scopus)

Microbial diversity in bioaerosol samples causing ODTS compared to reference bioaerosol samples as measured using Illumina sequencing and MALDI-TOF

Madsen, A. M., Zervas, A., Tendal, K. & Nielsen, J. L., 1 jul. 2015, I : Environmental Research. 140, s. 255-267 13 s.

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Åben adgang
reference sample
Poisons
Dust
Ionization
Desorption
116 Citationer (Scopus)
275 Downloads (Pure)

MiDAS: The field guide to the microbes of activated sludge

McIlroy, S. J., Saunders, A. M., Albertsen, M., Nierychlo, M., McIlroy, B., Hansen, A. A., Karst, S. M., Nielsen, J. L. & Nielsen, P. H., 27 jun. 2015, I : Database: The Journal of Biological Databases and Curation. 2015, s. 1-8 8 s., bav062.

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Åben adgang
Fil
activated sludge
Sewage
Taxonomies
Databases
microorganisms
10 Citationer (Scopus)

Monitoring of drug intake during pregnancy by questionnaires and LC-MS/MS drug urine screening: evaluation of both monitoring methods

Hoeke, H., Roeder, S., Bertsche, T., Lehmann, I., Borte, M., von Bergen, M. & Wissenbach, D. K., aug. 2015, I : Drug Testing and Analysis. 7, 8, s. 695-702 8 s.

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Preclinical Drug Evaluations
Drug Monitoring
pregnancy
urine
Screening
15 Citationer (Scopus)

Nitrosospira lacus sp. nov., a psychrotolerant, ammonia-oxidizing bacterium from sandy lake sediment

Urakawa, H., Garcia, J. C., Nielsen, J. L., Le, V. Q., Kozlowski, J. A., Stein, L. Y., Lim, C. K., Pommerening-Röser, A., Martens-Habbena, W., Stahl, D. A. & Klotz, M. G., 2015, I : International Journal of Systematic and Evolutionary Microbiology. 65, Pt_1, s. 242-250 9 s.

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Nitrosospira
Lakes
Ammonia
Nitrosolobus multiformis
lacustrine deposit

On-Site Enzyme Production by Trichoderma asperellum for the Degradation of Duckweed

Bech, L., Herbst, F-A., Grell, M. N., Hai, Z. & Lange, L., 1 dec. 2015, I : Fungal Genomics & Biology. 5, 126.

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Åben adgang
Trichoderma asperellum
degradation
enzymes
wheat bran
cell walls
15 Citationer (Scopus)

Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure

Kalkhof, S., Dautel, F., Loguercio, S., Baumann, S., Trump, S., Jungnickel, H., Otto, W., Rudzok, S., Potratz, S., Luch, A., Lehmann, I., Beyer, A. & Von Bergen, M., 1 jan. 2015, I : Journal of Proteome Research. 14, 1, s. 164-182 19 s.

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Poisons
Benzo(a)pyrene
Toxicity
Metabolites
Proteome
20 Citationer (Scopus)

Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates

Goris, T., Schiffmann, C. L., Gadkari, J., Schubert, T., Seifert, J., Jehmlich, N., Von Bergen, M. & Diekert, G., 21 sep. 2015, I : Scientific Reports. 5, 13794.

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Åben adgang
Sulfurospirillum
epsilon-Proteobacteria
tetrachloroethylene
proteomics
electrons
18 Citationer (Scopus)

Rapid antimicrobial susceptibility testing of clinical isolates by digital time-lapse microscopy

Fredborg, M., Rosenvinge, F. L., Spillum, E., Krogsbo, S., Wang, M. & Søndergaard, T. E., 25 sep. 2015, I : European Journal of Clinical Microbiology & Infectious Diseases. 34, 12, s. 2385-2394 10 s.

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Åben adgang
26 Citationer (Scopus)

Rational design of alpha-helical antimicrobial peptides: Do's and don'ts

Uggerhøj, L. E., Poulsen, T. J., Munk, J. K., Fredborg, M., Sondergaard, T. E., Frimodt-Moller, N., Hansen, P. R. & Wimmer, R., 2015, I : ChemBioChem. 16, 2, s. 242-253 12 s.

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10 Citationer (Scopus)

Re-appraisal of the phylogeny and fluorescence in situ hybridization probes for the analysis of the Competibacteraceae in wastewater treatment systems

McIlroy, S. J., Nittami, T., Kanai, E., Fukuda, J., Saunders, A. M. & Nielsen, P. H., 1 apr. 2015, I : Environmental Microbiology Reports. 7, 2, s. 166-174 9 s.

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Phylogeny
Waste Water
fluorescence in situ hybridization
wastewater treatment
Fluorescence In Situ Hybridization

ReCoverP - genvinding af fosfor fra spildevandsslam

Reitzel, K., Nielsen, P. H., Christensen, M. L., Qu, H., Wimmer, R., Nierychlo, M., Jørgensen, C. & Nielsen, U. G., 2015, I : Dansk Kemi. 98, 6/7, s. 25-27 3 s.

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7 Citationer (Scopus)

Screening for intrinsic water use efficiency in a potato dihaploid mapping population under progressive drought conditions

Topbjerg, H. B., Kaminski, K. P., Kørup, K., Nielsen, K. L., Kirk, H. G., Andersen, M. N. & Liu, F., 4 jul. 2015, I : Acta Agriculturae Scandinavica, Section B - Soil & Plant Science. 65, 5, s. 400-411 12 s.

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dihaploidy
abscisic acid
water use efficiency
potato
drought
6 Citationer (Scopus)

Selenocysteine-independent suppression of UGA codons in the archaeon Methanococcus maripaludis

Seyhan, D., Jehmlich, N., Von Bergen, M., Fersch, J. & Rother, M., 1 nov. 2015, I : Biochimica et Biophysica Acta - General Subjects. 1850, 11, s. 2385-2392 8 s.

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Methanococcus
Selenocysteine
Terminator Codon
Archaea
formic acid
1 Citation (Scopus)

Solution NMR and molecular dynamics reveal a persistent alpha helix within the dynamic region of PsbQ from photosystem II of higher plants

Rathner, P., Rathner, A., Horničáková, M., Wohlschlager, C., Chandra, K., Kohoutová, J., Ettrich, R., Wimmer, R. & Müller, N., sep. 2015, I : Proteins: Structure, Function, and Bioinformatics. 83, 9, s. 1677-1686 10 s.

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Åben adgang
Photosystem II Protein Complex
Molecular Dynamics Simulation
Molecular dynamics
Nuclear magnetic resonance
X-Rays

Stabilization and de-stabilization of (membrane-)proteins by microbial glycolipid and lipopeptide biosurfactants - in-vivo relevance and industrial applications

Andersen, K. K., Vad, B. S., Stenvang, M. R., Dueholm, M. S., Nielsen, P. H. & Otzen, D., 27 jan. 2015, I : Biophysical Journal. 108, 2, s. 521a-522a 2 s.

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