Publikationer pr. år
Publikationer pr. år
Personlig profil
Forskningsprofil
Prof. Dr. Uchida’s lab is interested in elucidating the functions of non-coding RNAs (ncRNAs) and epitranscriptomics enzymes using dry (bioinformatics) and wet (biology) lab techniques. He and his team have built a number of bioinformatics tools to help analyze high-throughput data (e.g., microarrays, RNA-seq). Prof. Dr. Uchida utilizes knockout and transgenic mice to understand the effects of ncRNAs and epitranscriptomics to cardiovascular system and development.
Forskningsprofil
Currently, I am serving as Guest Editors for the following special issues/collection:
[1] Non-Coding RNA: "Methods and Tools in RNA biology" (Deadline: May 20, 2023)
[2] Biomolecules: "Biomolecular approaches to regulate RNA expression and functions" (Deadline: May 31, 2023)
[3] Biomolecules: "Advances in RNA as Diagnostic Biomarkers" (Deadline: May 31, 2023)
[4] Frontiers in Cardiovascular Medicine: "Rising Stars in Atherosclerosis and Vascular Medicine: 2023" (Deadline: August 12, 2023)
[5] BioTech: "Computational Methods for the Analysis of RNA Structures and Modifications" (Deadline: October 1, 2023)
[6] Clinical and Translational Discovery: "RNA Medicine" (Deadline: December 31, 2023)
[7] Non-Coding RNA: "Computational Approaches for Pinpointing the Locations and Properties of Non-coding RNAs" (Deadline: December 31, 2023)
Uddannelse (Akademiske kvalifikationer)
Molecular Biology, Ph.D., Japan Advanced Institute of Science and Technology
apr. 2004 → mar. 2007
Dimissionsdato: 22 mar. 2007
Bioinformatics, M.S., Japan Advanced Institute of Science and Technology
apr. 2002 → sep. 2003
Dimissionsdato: 26 sep. 2003
Biology & Ancient Greek, B.S., Creighton University
aug. 1994 → maj 1998
Dimissionsdato: 16 maj 1998
Eksterne ansættelser
Advisory Board Member of Heliyon Genetics, Cell Press
mar. 2023 → feb. 2024
Editorial board member of American Journal of Physiology – Heart and Circulatory Physiology
jan. 2023 → …
Member, COST Action CA21113 - Genome Editing to Treat Humans Diseases (GenE-Humdi)
jan. 2023 → …
Associate Editor of Physiological Reports
jan. 2023 → …
Editorial board member of Global Translational Medicine
dec. 2022 → …
Member, COST Action CA21169 - Information, Coding, and Biological Function: the Dynamics of Life (DYNALIFE)
nov. 2022 → …
Member, COST Action CA21153 - Network for implementing multiomics approaches in atherosclerotic cardiovascular disease prevention and research (AtheroNET)
nov. 2022 → …
Editorial board member for Biochemical Genetics, Springer Science+Business Media, LLC, part of Springer Nature
okt. 2022 → …
Editorial board member of the Physiological Genomics
jul. 2022 → …
Editorial board member for Biomolecules
jun. 2022 → maj 2024
Associate Editor for Editorial Board of Integrative Bioinformatics, Frontiers in Bioinformatics, Frontiers Media SA
jun. 2022 → …
Associate Editor for Physiological Reports
jan. 2022 → dec. 2025
Section Editor in “Transcriptomics” for Current Bioinformatics
dec. 2021 → …
Editorial board member for Molecular Medicine Reports, Spandidos Publications
dec. 2021 → …
Editorial board member for Frontiers in Bioscience-Elite
okt. 2021 → …
Partner, EPITRAN COST Action CA16120 – European Epitranscriptomics Network
14 sep. 2021 → …
Editorial board member for ExRNA
sep. 2021 → aug. 2023
Review Editor for Environmental, Aviation and Space Physiology, Frontiers in Physiology
sep. 2021 → …
Editorial board member for Pharmacogenomics Research and Personalized Medicine
aug. 2021 → jul. 2023
Review Editor for Pharmacology of Anti-Cancer Drugs, Frontiers in Pharmacology and Frontiers in Oncology
25 nov. 2020 → …
Editorial board member for Journal of Molecular and Clinical Medicine
nov. 2020 → okt. 2022
Member, CardioRNA COST Action CA17129 – Catalysing transcriptomics research in cardiovascular disease
nov. 2020 → …
Associate Editor for Editorial Board of Atherosclerosis and Vascular Medicine, Frontiers in Cardiovascular Medicine, Frontiers Media SA
jan. 2020 → …
Editorial board member for Annals of Translational Medicine, AME Publishing Company
nov. 2019 → okt. 2021
Fellow of the American Heart Association (FAHA), American Heart Association
sep. 2019 → …
Editorial board member for Non-Coding RNA, MDPI AG
jul. 2019 → …
Editorial board member for Computation, MDPI AG
jul. 2019 → …
Editorial board member for High-Throughput, MDPI AG
mar. 2019 → …
Review Editor for Cardiovascular and Smooth Muscle Pharmacology, Frontiers in Pharmacology, Frontiers Media SA
jan. 2019 → …
Editorial board member for American Journal of Physiology – Cell Physiology, American Physiological Society
jul. 2018 → …
Editorial board member for OA Journal - Antibodies, EnPress Publisher LLC
jun. 2018 → …
Editorial board member for Journal of Human and Clinical Genetics, SciAccess Publishers
jun. 2018 → …
Editorial board member for Circulation Research, American Heart Association
jun. 2018 → jun. 2020
Review Editor for Cardiovascular Metabolism, Frontiers in Cardiovascular Medicine, Frontiers Media SA
mar. 2017 → …
Emneord
- Biomedicin
- Medicin
- Datalogi
- Kemi og Biovidenskab
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Publikationer
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FibroDB: Expression Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibrosis
Ilieva, M. S., Miller, H. E., Agarwal, A., Paulus, G. K., Madsen, J. H., Bishop, A. J. R., Kauppinen, S. & Uchida, S., 28 jan. 2022, I: Non-coding RNA. 8, 1, 13.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
Åben adgangFil6 Citationer (Scopus)33 Downloads (Pure) -
The A-to-I RNA Editing Enzyme Adar1 Is Essential for Normal Embryonic Cardiac Growth and Development
Moore, J. B., Sadri, G., Fischer, A. G., Weirick, T., Militello, G., Wysoczynski, M., Gumpert, A. M., Braun, T. & Uchida, S., 31 jul. 2020, I: Circulation Research. 127, 4, s. 550-552 3 s.Publikation: Bidrag til tidsskrift › Letter › peer review
15 Citationer (Scopus) -
Adenosine-to-inosine RNA editing controls cathepsin S expression in atherosclerosis by enabling HuR-mediated post-transcriptional regulation
Stellos, K., Gatsiou, A., Stamatelopoulos, K., Perisic Matic, L., John, D., Lunella, F. F., Jaé, N., Rossbach, O., Amrhein, C., Sigala, F., Boon, R. A., Fürtig, B., Manavski, Y., You, X., Uchida, S., Keller, T., Boeckel, J. N., Franco-Cereceda, A., Maegdefessel, L., Chen, W., & 6 flere, 1 okt. 2016, I: Nature Medicine. 22, 10, s. 1140-1150 11 s.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
174 Citationer (Scopus) -
Investigation of RNA editing sites within bound regions of RNA-binding proteins
Weirick, T., Militello, G., Hosen, M. R., John, D., Moore, J. B. & Uchida, S., dec. 2019, I: High-Throughput. 8, 4, 19.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review
Åben adgang2 Citationer (Scopus) -
American Journal of Physiology-Cell Physiology in 2022: at a glance
Delpire, E., Hawke, T. J., Karthikeyan, M., Kong, W., Nyström, A., Uchida, S. & Schaefer, L., 1 feb. 2023, I: American Journal of Physiology: Cell Physiology. 324, 2, s. C553–C557 5 s.Publikation: Bidrag til tidsskrift › Leder › peer review
Forskningsdatasæt
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Differentially regulated genes in the heart of benzene exposed TAC-instrumented mice
Zelko, I. N. (Ophavsperson), Dassanayaka, S. (Ophavsperson), Malovichko, M. V. (Ophavsperson), Howard, C. M. (Ophavsperson), Garrett, L. F. (Ophavsperson), Uchida, S. (Ophavsperson), Brittian, K. R. (Ophavsperson), Jones, S. P. (Ophavsperson) & Srivastava, S. (Ophavsperson), Dryad, 2021
DOI: 10.5061/dryad.12jm63xz6, http://datadryad.org/stash/dataset/doi:10.5061/dryad.12jm63xz6
Datasæt