BBReader: A computer program for the combined use of the BioMagResBank and PDB databases

Reinhard Wimmer; Norbert Müller; Steffen B. Petersen

doi:10.1023/A:1018631903764

BBReader: A computer program for the combined use of the BioMagResBank and PDB databases

Reinhard Wimmer, Norbert Müller, Steffen B. Petersen^*

^*Kontaktforfatter

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

6 Citationer (Scopus)

Abstract

A computer program ('BBReader') was developed which performs an inverse search in the BioMagResBank database. Given (cross) peak positions of a protein, the program searches for atoms with matching chemical shifts and suggests possible assignments for user-specified homo- and heteronuclear one- to three-dimensional COSY- and NOESY-type experiments. It can handle ¹H, ¹³C and ¹⁵N spectra. Distance information from PDB files can be utilized for filtering possible NOESY cross peak assignments.

Originalsprog	Engelsk
Tidsskrift	Journal of Biomolecular NMR
Vol/bind	9
Udgave nummer	1
Sider (fra-til)	101-104
Antal sider	4
ISSN	0925-2738
DOI	https://doi.org/10.1023/A:1018631903764
Status	Udgivet - 1 jan. 1997
Udgivet eksternt	Ja

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10.1023/A:1018631903764

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AU - Müller, Norbert

AU - Petersen, Steffen B.

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AB - A computer program ('BBReader') was developed which performs an inverse search in the BioMagResBank database. Given (cross) peak positions of a protein, the program searches for atoms with matching chemical shifts and suggests possible assignments for user-specified homo- and heteronuclear one- to three-dimensional COSY- and NOESY-type experiments. It can handle 1H, 13C and 15N spectra. Distance information from PDB files can be utilized for filtering possible NOESY cross peak assignments.

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KW - Chemical shift assignment

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KW - Protein

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BBReader: A computer program for the combined use of the BioMagResBank and PDB databases

Abstract

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