Estimation of Y haplotype frequencies with lower order dependencies

Mikkel Meyer Andersen, Amke Caliebe, Katrine Kirkeby, Maria Knudsen, Ninna Vihrs, James M. Curran

Publikation: Bidrag til tidsskriftTidsskriftartikelpeer review

6 Citationer (Scopus)

Abstrakt

Estimating Y haplotype population frequencies is a demanding task in forensic genetics. Despite the suggestion of various methods, none these have yet reached a level of accuracy and precision that is acceptable to the forensic genetics community. At the basis of this problem is the complex dependency structure between the involved STR loci. Here, we approximate this structure by the use of specific graphical models, namely t-cherry junction trees. We apply trees of order three by which dependencies between three STR loci can be taken into account, thereby extending the Chow–Liu method which is restricted to pairwise dependencies. We show that the t-cherry tree method outperforms the Chow–Liu method as well as the well-established discrete Laplace method in estimation accuracy.

OriginalsprogEngelsk
Artikelnummer102214
TidsskriftForensic Science International: Genetics
Vol/bind46
ISSN1872-4973
DOI
StatusUdgivet - maj 2020

Fingeraftryk

Dyk ned i forskningsemnerne om 'Estimation of Y haplotype frequencies with lower order dependencies'. Sammen danner de et unikt fingeraftryk.

Citationsformater