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Abstract
Studies using 16S rRNA and shotgun metagenomics typically yield different results, usually attributed to PCR amplification biases. We introduce Greengenes2, a reference tree that unifies genomic and 16S rRNA databases in a consistent, integrated resource. By inserting sequences into a whole-genome phylogeny, we show that 16S rRNA and shotgun metagenomic data generated from the same samples agree in principal coordinates space, taxonomy and phenotype effect size when analyzed with the same tree.
Originalsprog | Engelsk |
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Tidsskrift | Nature Biotechnology |
Vol/bind | 42 |
Sider (fra-til) | 715–718 |
Antal sider | 4 |
ISSN | 1087-0156 |
DOI | |
Status | Udgivet - maj 2024 |
Bibliografisk note
© 2023. The Author(s).Fingeraftryk
Dyk ned i forskningsemnerne om 'Greengenes2 unifies microbial data in a single reference tree'. Sammen danner de et unikt fingeraftryk.Projekter
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Microflora Danica: The Microbiome of Denmark
Albertsen, M. (PI (principal investigator)), Nielsen, P. H. (PI (principal investigator)), Jensen, T. B. N. (Projektdeltager), Sørensen, E. A. (Projektdeltager), Sereika, M. (Projektdeltager), Dottorini, G. (Projektdeltager), Petriglieri, F. (Projektdeltager), Jørgensen, V. R. (Projektdeltager), Kirkegaard, R. H. (Projektdeltager), Yang, Y. (Projektdeltager), Karst, S. M. (Projektdeltager), Giguere, A. T. (Projektdeltager), Knutsson, S. (Projektdeltager), Singleton, C. M. (Projektdeltager), Dueholm, M. K. D. (Projektdeltager), Mølvang Dall, S. (Projektdeltager), Kristensen, J. M. (Projektdeltager) & Delogu, F. (Projektdeltager)
01/01/2019 → 31/12/2025
Projekter: Projekt › Forskning