TY - JOUR
T1 - Prostate zonal segmentation in 1.5T and 3T T2W MRI using a convolutional neural network
AU - Jensen, Carina
AU - Sørensen, Kristine Storm
AU - Jørgensen, Cecilia Klitgaard
AU - Nielsen, Camilla Winther
AU - Høy, Pia Christine
AU - Langkilde, Niels-Christian
AU - Østergaard, Lasse Riis
PY - 2019/1
Y1 - 2019/1
N2 - Zonal segmentation of the prostate gland using magnetic resonance imaging (MRI) is clinically important for prostate cancer (PCa) diagnosis and image-guided treatments. A two-dimensional convolutional neural network (CNN) based on the U-net architecture was evaluated for segmentation of the central gland (CG) and peripheral zone (PZ) using a dataset of 40 patients (34 PCa positive and 6 PCa negative) scanned on two different MRI scanners (1.5T GE and 3T Siemens). Images were cropped around the prostate gland to exclude surrounding tissues, resampled to
0.5
×
0.5
×
0.5
mm
voxels
and
z
-score normalized before being propagated through the CNN. Performance was evaluated using the Dice similarity coefficient (DSC) and mean absolute distance (MAD) in a fivefold cross-validation setup. Overall performance showed DSC of 0.794 and 0.692, and MADs of 3.349 and 2.993 for CG and PZ, respectively. Dividing the gland into apex, mid, and base showed higher DSC for the midgland compared to apex and base for both CG and PZ. We found no significant difference in DSC between the two scanners. A larger dataset, preferably with multivendor scanners, is necessary for validation of the proposed algorithm; however, our results are promising and have clinical potential.
AB - Zonal segmentation of the prostate gland using magnetic resonance imaging (MRI) is clinically important for prostate cancer (PCa) diagnosis and image-guided treatments. A two-dimensional convolutional neural network (CNN) based on the U-net architecture was evaluated for segmentation of the central gland (CG) and peripheral zone (PZ) using a dataset of 40 patients (34 PCa positive and 6 PCa negative) scanned on two different MRI scanners (1.5T GE and 3T Siemens). Images were cropped around the prostate gland to exclude surrounding tissues, resampled to
0.5
×
0.5
×
0.5
mm
voxels
and
z
-score normalized before being propagated through the CNN. Performance was evaluated using the Dice similarity coefficient (DSC) and mean absolute distance (MAD) in a fivefold cross-validation setup. Overall performance showed DSC of 0.794 and 0.692, and MADs of 3.349 and 2.993 for CG and PZ, respectively. Dividing the gland into apex, mid, and base showed higher DSC for the midgland compared to apex and base for both CG and PZ. We found no significant difference in DSC between the two scanners. A larger dataset, preferably with multivendor scanners, is necessary for validation of the proposed algorithm; however, our results are promising and have clinical potential.
KW - Convolutional neural net
KW - Magnetic resonance imaging
KW - Prostate cancer
KW - Zonal segmentation
UR - http://www.scopus.com/inward/record.url?scp=85062632512&partnerID=8YFLogxK
U2 - 10.1117/1.JMI.6.1.014501
DO - 10.1117/1.JMI.6.1.014501
M3 - Journal article
C2 - 30820440
SN - 2329-4302
VL - 6
JO - Journal of medical imaging (Bellingham, Wash.)
JF - Journal of medical imaging (Bellingham, Wash.)
IS - 1
M1 - 014501
ER -