Data from: "Diagnostic SNPs for inferring population structure in American mink (Neovison vison) identified through RAD sequencing" in Genomic Resources Notes accepted 1 October 2014 to 30 November 2014

  • Janne Pia Thirstrup (Creator)
  • Aritz Ruiz-Gonzalez (Creator)
  • Jose Martin Pujolar (Creator)
  • Peter Larsen (Creator)
  • Rasmus O. Nielsen (University of the Basque Country) (Creator)
  • Ettore Randi (University of the Basque Country) (Creator)
  • Andrzej Zalewski (Creator)
  • Cino Pertoldi (Creator)
  • Mariella Baratti (Creator)
  • Tiziana Di Lorenzo (Creator)
  • Alessio Iannucci (Creator)
  • Diana Maria Paola Galassi (Creator)
  • Valentina Iannilli (Creator)
  • Just Jensen (Creator)
  • Dragos Postolache (Creator)
  • Giovanni Giuseppe Vendramin (Creator)

Dataset

Description

The article documents the public availability of RAD sequencing data and generated SNPs for the American mink (Neovison vison). 224,095 polymorphic loci were identified from 14 mink from which primers were designed for a subset of 380 SNPs. The panel was tested on 211 mink. Fisher’s F-statistics (Fis, FIT and FST) as well as observed (HO), expected (HE) and unbiased expected (uHE) heterozygosity was calculated for the SNPs and 194 SNPs was validated as being useful for population genetic studies.
Date made available23 Jan 2015
PublisherDryad
Geographical coverageDenmark
  • Genomic resources notes accepted 1 October 2014-30 November 2014

    Baratti, M., Cattonaro, F., Di Lorenzo, T., Galassi, D. M. P., Iannilli, V., Iannucci, A., Jensen, J., Larsen, P. F., Nielsen, R. O., Pertoldi, C., Postolache, D., Pujolar, J. M., Randi, E., Ruiz-Gonzalez, A., Thirstrup, J. P., Vendramin, G. G., Zalewski, A. & Genomic Resources Development Consortium, Mar 2015, In: Molecular Ecology Resources. 15, 2, p. 458-9 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

    8 Citations (Scopus)

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