Data from: "Diagnostic SNPs for inferring population structure in American mink (Neovison vison) identified through RAD sequencing" in Genomic Resources Notes accepted 1 October 2014 to 30 November 2014

  • Mariella Baratti (Creator)
  • Tiziana Di Lorenzo (Creator)
  • Diana Maria Paola Galassi (Creator)
  • Valentina Iannilli (Creator)
  • Alessio Iannucci (Creator)
  • Just Jensen (Creator)
  • Peter Larsen (Creator)
  • Rasmus O. Nielsen (GenoSkan A/S) (Creator)
  • Cino Pertoldi (Creator)
  • Dragos Postolache (Creator)
  • Jose Martin Pujolar (Creator)
  • Ettore Randi (University of the Basque Country) (Creator)
  • Aritz Ruiz-González (Creator)
  • Janne Pia Thirstrup (Creator)
  • Giovanni Giuseppe Vendramin (Creator)
  • Andrzej Zalewski (Creator)

Dataset

Description

The article documents the public availability of RAD sequencing data and generated SNPs for the American mink (Neovison vison). 224,095 polymorphic loci were identified from 14 mink from which primers were designed for a subset of 380 SNPs. The panel was tested on 211 mink. Fisher's F-statistics (Fis, FIT and FST) as well as observed (HO), expected (HE) and unbiased expected (uHE) heterozygosity was calculated for the SNPs and 194 SNPs was validated as being useful for population genetic studies.
Date made available23 Jan 2015
PublisherZenodo
Geographical coverageDenmark

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  • 1 Journal article

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