Environmental Microbiology

Search results

• mmlong2-lite: a lightweight workflow for microbial genome recovery with long-read sequencing data

  Sereika, M. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.7607335, https://zenodo.org/record/7607335

  Dataset

• mmlong2-lite

  Sereika, M. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.7558541, https://zenodo.org/record/7558541

  Dataset

• mmlong2-lite: a lightweight workflow for microbial genome recovery with long-read sequencing data

  Sereika, M. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.7602112, https://zenodo.org/record/7602112

  Dataset

• mmlong2-lite: a lightweight workflow for microbial genome recovery with long-read sequencing data

  Sereika, M. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.8013498, https://zenodo.org/record/8013498

  Dataset

• Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark

  Michaelsen, T. Y. (Creator), Bennedbæk, M. (Creator), Christiansen, L. E. (Creator), Jørgensen, M. S. F. (Creator), Møller, C. H. (Creator), Sørensen, E. A. (Creator), Knutsson, S. (Creator), Brandt, J. (Creator), Jensen, T. B. N. (Creator), Chiche-Lapierre, C. (Creator), Collados, E. F. (Creator), Sørensen, T. (Creator), Petersen, C. (Creator), Le-Quy, V. (Creator), Sereika, M. (Creator), Hansen, F. T. (Creator), Rasmussen, M. (Creator), Fonager, J. (Creator), Karst, S. M. (Creator), Marvig, R. L. (Creator), Stegger, M. (Creator), Sieber, R. N. (Creator), Skov, R. (Creator), Legarth, R. (Creator), Krause, T. G. (Creator), Fomsgaard, A. (Creator) & Albertsen, M. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.c.5978621.v1, https://springernature.figshare.com/collections/Introduction_and_transmission_of_SARS-CoV-2_lineage_B_1_1_7_Alpha_variant_in_Denmark/5978621/1

  Dataset

• Additional file 2 of Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark

  Michaelsen, T. Y. (Creator), Bennedbæk, M. (Creator), Christiansen, L. E. (Creator), Jørgensen, M. S. F. (Creator), Møller, C. H. (Creator), Sørensen, E. A. (Creator), Knutsson, S. (Creator), Brandt, J. (Creator), Jensen, T. B. N. (Creator), Chiche-Lapierre, C. (Creator), Collados, E. F. (Creator), Sørensen, T. (Creator), Petersen, C. (Creator), Le-Quy, V. (Creator), Sereika, M. (Creator), Hansen, F. T. (Creator), Rasmussen, M. (Creator), Fonager, J. (Creator), Karst, S. M. (Creator), Marvig, R. L. (Creator), Stegger, M. (Creator), Sieber, R. N. (Creator), Skov, R. (Creator), Legarth, R. (Creator), Krause, T. G. (Creator), Fomsgaard, A. (Creator) & Albertsen, M. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.19703921.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Introduction_and_transmission_of_SARS-CoV-2_lineage_B_1_1_7_Alpha_variant_in_Denmark/19703921/1

  Dataset

• Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark

  Michaelsen, T. Y. (Creator), Bennedbæk, M. (Creator), Christiansen, L. E. (Creator), Jørgensen, M. S. F. (Creator), Møller, C. H. (Creator), Sørensen, E. A. (Creator), Knutsson, S. (Creator), Brandt, J. (Creator), Jensen, T. B. N. (Creator), Chiche-Lapierre, C. (Creator), Collados, E. F. (Creator), Sørensen, T. (Creator), Petersen, C. (Creator), Le-Quy, V. (Creator), Sereika, M. (Creator), Hansen, F. T. (Creator), Rasmussen, M. (Creator), Fonager, J. (Creator), Karst, S. M. (Creator), Marvig, R. L. (Creator), Stegger, M. (Creator), Sieber, R. N. (Creator), Skov, R. (Creator), Legarth, R. (Creator), Krause, T. G. (Creator), Fomsgaard, A. (Creator) & Albertsen, M. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.c.5978621, https://springernature.figshare.com/collections/Introduction_and_transmission_of_SARS-CoV-2_lineage_B_1_1_7_Alpha_variant_in_Denmark/5978621

  Dataset

• Additional file 2 of Introduction and transmission of SARS-CoV-2 lineage B.1.1.7, Alpha variant, in Denmark

  Michaelsen, T. Y. (Creator), Bennedbæk, M. (Creator), Christiansen, L. E. (Creator), Jørgensen, M. S. F. (Creator), Møller, C. H. (Creator), Sørensen, E. A. (Creator), Knutsson, S. (Creator), Brandt, J. (Creator), Jensen, T. B. N. (Creator), Chiche-Lapierre, C. (Creator), Collados, E. F. (Creator), Sørensen, T. (Creator), Petersen, C. (Creator), Le-Quy, V. (Creator), Sereika, M. (Creator), Hansen, F. T. (Creator), Rasmussen, M. (Creator), Fonager, J. (Creator), Karst, S. M. (Creator), Marvig, R. L. (Creator), Stegger, M. (Creator), Sieber, R. N. (Creator), Skov, R. (Creator), Legarth, R. (Creator), Krause, T. G. (Creator), Fomsgaard, A. (Creator) & Albertsen, M. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.19703921, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Introduction_and_transmission_of_SARS-CoV-2_lineage_B_1_1_7_Alpha_variant_in_Denmark/19703921

  Dataset

• Clinical results and microbiota changes after faecal microbiota transplantation for chronic pouchitis: a pilot study

  Kousgaard, S. J. (Creator), Michaelsen, T. Y. (Creator), Nielsen, H. L. (Creator), Kirk, K. F. (Creator), Brandt, J. (Creator), Albertsen, M. (Creator) & Thorlacius-Ussing, O. (Creator), Taylor & Francis, 2020

  DOI: 10.6084/m9.figshare.12123111, https://tandf.figshare.com/articles/Clinical_results_and_microbiota_changes_after_faecal_microbiota_transplantation_for_chronic_pouchitis_a_pilot_study/12123111

  Dataset

• Clinical results and microbiota changes after faecal microbiota transplantation for chronic pouchitis: a pilot study

  Kousgaard, S. J. (Creator), Michaelsen, T. Y. (Creator), Nielsen, H. L. (Creator), Kirk, K. F. (Creator), Brandt, J. (Creator), Albertsen, M. (Creator) & Thorlacius-Ussing, O. (Creator), Taylor & Francis, 2020

  DOI: 10.6084/m9.figshare.12123111.v1, https://tandf.figshare.com/articles/Clinical_results_and_microbiota_changes_after_faecal_microbiota_transplantation_for_chronic_pouchitis_a_pilot_study/12123111/1

  Dataset

• Influence of biofilm growth age, media, antibiotic concentration and exposure time on Staphylococcus aureus and Pseudomonas aeruginosa biofilm removal in vitro

  Chen, X. (Contributor), Thomsen, T. R. (Creator), Winkler, H. (Creator) & Xu, Y. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.c.5100876, https://springernature.figshare.com/collections/Influence_of_biofilm_growth_age_media_antibiotic_concentration_and_exposure_time_on_Staphylococcus_aureus_and_Pseudomonas_aeruginosa_biofilm_removal_in_vitro/5100876

  Dataset

• Additional file 1 of Influence of biofilm growth age, media, antibiotic concentration and exposure time on Staphylococcus aureus and Pseudomonas aeruginosa biofilm removal in vitro

  Chen, X. (Contributor), Thomsen, T. R. (Creator), Winkler, H. (Creator) & Xu, Y. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12858405.v1, https://doi.org/10.6084%2Fm9.figshare.12858405.v1

  Dataset

• MOESM4 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 22 Jun 2017

  DOI: 10.6084/m9.figshare.c.3808579_d4.v1, https://springernature.figshare.com/articles/dataset/MOESM4_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135947/1

  Dataset

• MOESM2 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 22 Jun 2017

  DOI: 10.6084/m9.figshare.c.3808579_d2.v1, https://springernature.figshare.com/articles/dataset/MOESM2_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135923/1

  Dataset

• MOESM5 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 22 Jun 2017

  DOI: 10.6084/m9.figshare.c.3808579_d5.v1, https://springernature.figshare.com/articles/dataset/MOESM5_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135956/1

  Dataset

• MOESM3 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 22 Jun 2017

  DOI: 10.6084/m9.figshare.c.3808579_d3.v1, https://springernature.figshare.com/articles/dataset/MOESM3_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135938/1

  Dataset

• MOESM1 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 22 Jun 2017

  DOI: 10.6084/m9.figshare.c.3808579_d1.v1, https://springernature.figshare.com/articles/dataset/MOESM1_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135902/1

  Dataset

• MOESM1 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3808579_d1, https://figshare.com/articles/MOESM1_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135902

  Dataset

• MOESM2 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3808579_d2, https://figshare.com/articles/MOESM2_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135923

  Dataset

• MOESM3 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3808579_d3, https://figshare.com/articles/MOESM3_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135938

  Dataset

• MOESM4 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3808579_d4, https://figshare.com/articles/MOESM4_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135947

  Dataset

• Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3808579, https://figshare.com/collections/Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/3808579

  Dataset

• Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3808579.v1, https://figshare.com/collections/Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/3808579/1

  Dataset

• MOESM5 of Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge

  Wilkens, C. (Creator), Busk, P. K. (Creator), Pilgaard, B. (Creator), Zhang, W. (Creator), Nielsen, K. L. (Creator), Nielsen, P. H. (Creator) & Lange, L. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3808579_d5, https://figshare.com/articles/MOESM5_of_Diversity_of_microbial_carbohydrate-active_enzymes_in_Danish_anaerobic_digesters_fed_with_wastewater_treatment_sludge/5135956

  Dataset

• Additional file 6: Table S3. of In vivo gene expression in a Staphylococcus aureus prosthetic joint infection characterized by RNA sequencing and metabolomics: a pilot study

  Thomsen, T. R. (Creator), Nielsen, P. H. (Creator), Le, V. Q. (Contributor), Schønheyder, H. (Contributor), Maltesen, R. G. (Creator), Xu, Y. (Contributor), Larsen, L. H. (Creator), Lund Nielsen, J. (Creator) & Nielsen, K. L. (Creator), Figshare, 14 Dec 2016

  DOI: 10.6084/m9.figshare.c.3605630_d5.v1, https://doi.org/10.6084%2Fm9.figshare.c.3605630_d5.v1

  Dataset