Research Output

2020

Can operational problems at full-scale activated sludge systems be solved with sludge transplantation?

Wágner, D. S., Stokholm-Bjerregaard, M., Dottorini, G., Kucheryavskiy, S., Nierychlo, M. A., Nielsen, P. H. & Nielsen, P. H., 2020.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceCommunication

Can we solve operational problems with full-scale activated sludge transplantation?

Wágner, D. S., Stokholm-Bjerregaard, M., Dottorini, G., Kucheryavskiy, S., Nierychlo, M. A., Nielsen, P. H. & Nielsen, P. H., 2020.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceCommunication

Erratum to “Biomass segregation between biofilm and flocs improves the control of nitrite-oxidizing bacteria in mainstream partial nitritation and anammox processes” [Water Res. 154 (2019) 104–116](S0043135419300016)(10.1016/j.watres.2018.12.051)

Laureni, M., Weissbrodt, D. G., Villez, K., Robin, O., de Jonge, N., Rosenthal, A., Wells, G., Nielsen, J. L., Morgenroth, E. & Joss, A., 1 Feb 2020, In : Water Research. 169, 115133.

Research output: Contribution to journalComment/debateResearchpeer-review

Open Access

Genetic structure of the European hedgehog (Erinaceus europaeus) in Denmark

Rasmussen, S. L., Nielsen, J. L., Jones, O. R., Berg, T. B. & Pertoldi, C., 2020, In : PLOS ONE. 15, 1, p. e0227205 e0227205.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
26 Downloads (Pure)

Impact of polyethylene on salivary glands proteome in Galleria melonella

Peydaei, A., Bagheri, H., Gurevich, L., de Jonge, N. & Nielsen, J. L., 24 Feb 2020, In : Comparative biochemistry and physiology. Part D, Genomics & proteomics. 34, p. 100678

Research output: Contribution to journalJournal articleResearchpeer-review

Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms

Bahrndorff, S., Ruiz-González, A., de Jonge, N., Nielsen, J. L., Skovgård, H. & Pertoldi, C., 21 Jan 2020, In : BMC Genomics. 21, 1, p. 66

Research output: Contribution to journalJournal articleResearchpeer-review

Multidisciplinary Diagnostic Algorithm for Evaluation of Patients Presenting with a Prosthetic Problem in the Hip or Knee: A Prospective Study

Khalid, V., Schønheyder, H. C., Larsen, L. H., Nielsen, P. T., Kappel, A., Thomsen, T. R., Aleksyniene, R., Lorenzen, J., Ørsted, I., Simonsen, O., Jordal, P. L. & Rasmussen, S., 2020, In : Diagnostics. 10, 2, p. 1-14 14 p., 98.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
3 Downloads (Pure)
Open Access
1 Citation (Scopus)

Regression on imperfect class labels derived by unsupervised clustering

Brøndum, R. F., Michaelsen, T. Y. & Bøgsted, M., 3 Mar 2020, In : Briefings in Bioinformatics.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access

Stream water quality assessment by metabarcoding of invertebrates

Kuntke, F., de Jonge, N., Hesselsøe, M. & Lund Nielsen, J., Apr 2020, In : Ecological Indicators. 111, 105982.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access

The New MiDAS Field Guide: Comprehensive Online Ecosystem-specific Database of Microorganisms in Wastewater Treatment Systems

Hove Hansen, S., Nierychlo, M. A., Xu, Y., David Green, N., Andersen, K. S., Dueholm, M. S. & Nielsen, P. H., 30 Jan 2020.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearch

Unlinked rRNA genes are widespread among bacteria and archaea

Brewer, T. E., Albertsen, M., Edwards, A., Kirkegaard, R. H., Rocha, E. P. C. & Fierer, N., Feb 2020, In : ISME Journal. 14, 2, p. 597-608 12 p.

Research output: Contribution to journalJournal article

2019
Open Access
File
5 Downloads (Pure)

Algal fertigation – an innovative agronomic approach to reduce greenhouse gas emission from crops production

Wágner, D. S., Clarissa Cazzaniga, C., Steidl, M., Dechesne, A., Valverde Pérez, B. & Plósz, B. G., 2019.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceCommunication

An in vitro chronic wound model with in vivo aspects

Xu, Y., Jonikaite, M., Chen, X., Bjarnsholt, T., Kirketerp-Møller, K. & Thomsen, T. R., 5 May 2019.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

File
Open Access
File
11 Downloads (Pure)

Biogas upgrading with hydrogenotrophic methanogenic biofilms

Maegaard, K., Garcia-Robledo, E., Kofoed, M. V. W., Agneessens, L. M., de Jonge, N., Nielsen, J. L., Ottosen, L. D. M., Nielsen, L. P. & Revsbech, N. P., 1 Sep 2019, In : Bioresource Technology. 287, 121422.

Research output: Contribution to journalJournal articleResearchpeer-review

3 Citations (Scopus)

Biomass segregation between biofilm and flocs improves the control of nitrite-oxidizing bacteria in mainstream partial nitritation and anammox processes

Laureni, M., Weissbrodt, D. G., Villez, K., Robin, O., de Jonge, N., Rosenthal, A., Wells, G., Nielsen, J. L., Morgenroth, E. & Joss, A., 1 May 2019, In : Water Research. 154, p. 104-116 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
18 Citations (Scopus)
6 Downloads (Pure)

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta

Moeller, F. U., Webster, N. S., Herbold, C. W., Behnam, F., Domman, D., Albertsen, M., Mooshammer, M., Markert, S., Turaev, D., Becher, D., Rattei, T., Schweder, T., Richter, A., Watzka, M., Nielsen, P. H. & Wagner, M., 1 Oct 2019, In : Environmental Microbiology. 21, 10, p. 3831-3854 24 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2 Citations (Scopus)

Climate change impacts on mountain biodiversity

Guisan, A., Broennimann, O., Buri, A., Cianfrani, C., D'Amen, M., Di Cola, V., Fernandes, R., Gray, S., Mateo, R. G., Pinto, E., Pradervand, J-N., Scherrer, D., von Däniken, I., Yashiro, E. & Vittoz, P., Jan 2019, Biodiversity and Climate Change: Transforming the Biosphere. Lovejoy, T. E. & Hannah, L. (eds.). Yale University Press, p. 221-233 13 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

1 Citation (Scopus)

Contribution of planktonic bacteria to MBR fouling

Jørgensen, M. K., Hove Hansen, S., Nierychlo, M. A., Christensen, M. L. & Nielsen, P. H., 25 Jun 2019.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

Dechloromonas: to be or not to be a PAO? That is the question!

Petriglieri, F., Singleton, C. M., Gomez, M. P., Petersen, J. F., Nierychlo, M. A. & Nielsen, P. H., 18 Nov 2019.

Research output: Contribution to conference without publisher/journalPosterResearch

File
39 Downloads (Pure)

Den globale phosphorudfordring

Reitzel, K., Qu, H., Christensen, M. L., Nielsen, U. G. & Nielsen, P. H., 2019, In : Aktuel Naturvidenskab. 5, p. 16-20 5 p.

Research output: Contribution to journalJournal articleResearch

Open Access

Diagnosis and understanding of chronic infections. Remember the biofilm

Thomsen, T. R., Xu, Y. & Lorenzen, J., 5 May 2019.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

File

DNA-analyser af rovdyr-ekskrementer på Bornholm

Pagh, S., Lund Nielsen, J., Pertoldi, C. & Overgaard, M. T., 2019, In : Natur på Bornholm. 17, p. 70-73 4 p.

Research output: Contribution to journalJournal articleCommunication

Drinking Water Microbiome Project: Is it Time?

Hull, N. M., Ling, F., Pinto, A. J., Albertsen, M., Jang, H. G., Hong, P. Y., Konstantinidis, K. T., LeChevallier, M., Colwell, R. R. & Liu, W. T., Aug 2019, In : Trends in Microbiology. 27, 8, p. 670-677 8 p.

Research output: Contribution to journalReview article

2 Citations (Scopus)

Dynamics of geosmin-producing bacteria in a full-scale saltwater recirculated aquaculture system

Lukassen, M. B., Podduturi, R., Rohaan, B., Jørgensen, N. O. G. & Nielsen, J. L., 1 Feb 2019, In : Aquaculture. 500, p. 170-177 8 p.

Research output: Contribution to journalJournal articleResearchpeer-review

1 Citation (Scopus)

Effects of ozone treatment on performance and microbial community composition in biofiltration systems treating ethyl acetate vapours

Covarrubias-García, I., de Jonge, N., Arriaga, S. & Nielsen, J. L., Oct 2019, In : Chemosphere. 233, p. 67-75 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2 Citations (Scopus)

Everything You Need to Know About Biofilms (But Were Afraid to Ask).

Thomsen, T. R., 22 May 2019.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

File
File
28 Downloads (Pure)

Extracellular polymeric substances of biofilms: Suffering from an identity crisis

Seviour, T., Derlon, N., Dueholm, M. S., Flemming, H-C., Girbal-Neuhauser, E., Horn, H., Kjelleberg, S., van Loosdrecht, M. C. M., Lotti, T., Malpei, M. F., Nerenberg, R., Neu, T. R., Paul, E., Yu, H. & Lin, Y., 15 Mar 2019, In : Water Research. 151, p. 1-7 7 p.

Research output: Contribution to journalJournal articleResearchpeer-review

27 Citations (Scopus)

Foam problems and foam-forming microbes in anaerobic digesters at wastewater treatment plant

Jiang, C., 2019, (Ph.d.-serien for Det Ingeniør- og Naturvidenskabelige Fakultet, Aalborg Universitet).

Research output: Book/ReportPh.D. thesisResearch

Full-scale activated sludge transplantation: A way to solve operational problems?

Wágner, D. S., Stokholm-Bjerregaard, M., Dottorini, G., Kucheryavskiy, S., Nierychlo, M. A. & Nielsen, P. H., 2019.

Research output: Contribution to conference without publisher/journalPosterCommunication

Open Access
File
7 Citations (Scopus)
120 Downloads (Pure)

Global diversity and biogeography of bacterial communities in wastewater treatment plants

Wu, L., Ning, D., Zhang, B., Li, Y., Zhang, P., Shan, X., Zhang, Q., Brown, M., Li, Z., Van Nostrand, J. D., Ling, F., Xiao, N., Zhang, Y., Vierheilig, J., Wells, G. F., Yang, Y., Deng, Y., Tu, Q., Wang, A., Global Water Microbiome Consortium & 15 others, Zhang, T., He, Z., Keller, J., Nielsen, P. H., Alvarez, P. J. J., Criddle, C. S., Wagner, M., Tiedje, J. M., He, Q., Curtis, T. P., Stahl, D. A., Alvarez-Cohen, L., Rittmann, B. E., Wen, X. & Zhou, J., 13 May 2019, In : Nature Microbiology. 4, 7, p. 1183-1195 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

20 Citations (Scopus)

Global genome‐centric metatranscriptomics unravels food webs in complex microbial communities

Yssing Michaelsen, T., Brandt, J., Karst, S. M., Kirkegaard, R. H. & Albertsen, M., 15 Jul 2019.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

Open Access
File
9 Downloads (Pure)

Identification of novel foam-forming microbes in full-scale mesophilic digester at a wastewater treatment plant

Jiang, C., Yashiro, E., Petersen, A-K. C. & Nielsen, P. H., 24 Jun 2019.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

Influence of Microbial Community Composition on Activated Sludge Floc Properties and Dewaterability

Hove Hansen, S., Nierychlo, M. A., Jiang, C., Jørgensen, M. K. & Nielsen, P. H., 17 Nov 2019.

Research output: Contribution to conference without publisher/journalPosterResearch

File
12 Downloads (Pure)

Microalgae and cyanobacteria modeling in water resource recovery facilities: A critical review

Brian D. Shoener, B. D., Schramm, S. M., Béline, F., Bernard, O., Martínez, C., Plósz, B. G., Snowling, S., Steyer, J-P., Valverde Pérez, B., Wágner, D. S. & Guest, J. S., 1 Feb 2019, In : Water Research X. 2, p. 100024 18 p., 100024.

Research output: Contribution to journalReview article

Open Access
File
8 Citations (Scopus)

Microbial production of the off-flavor geosmin in tilapia production in Brazilian water reservoirs: Importance of bacteria in the intestine and other fish-associated environments

Lukassen, M. B., de Jonge, N., Bjerregaard, S. M., Podduturi, R., Jørgensen, N. O. G., Petersen, M. A., David, G. S., da Silva, R. J. & Nielsen, J. L., 31 Oct 2019, In : Frontiers in Microbiology. 10, OCT, 2447.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File

Microbial Species and Biodiversity in Settling Dust within and between Pig Farms

White, J. K., Nielsen, J. L. & Madsen, A. M., Apr 2019, In : Environmental Research. 171, p. 558-567 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
3 Citations (Scopus)
76 Downloads (Pure)

New foam-formers discovered in Danish mesophilic anaerobic digesters

Jiang, C., McIlroy, S. J., Hao, L., Yashiro, E., Petriglieri, F. & Nielsen, P. H., 17 Nov 2019.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearch

New training to meet the global phosphorus challenge

Reitzel, K., Bennett, W., Berger, N., Brownlie, W. J., Bruun, S., Christensen, M. L., Cornell, D., van Dijk, K., Egemose, S., Eigner, H., Gluud, R. N., Gronfors, O., Hermann, L., Houot, S., Hupfer, M., Jacobs, B., Korving, L., Kjærgaard, C., Liimatainen, H., van Loosdrecht, M. C. M. & 22 others, Macintosh, K. A., Magid, J., Maia, F., Martin-Ortega, J., McGrath, J., Meulepas, R., Murry, M., Neset, T-S., Neumann, G., Nielsen, U. G., Nielsen, P. H., O’Flaherty, V., Qu, H., Santner, J., Seufert, V., Spears, B., Stringer, L. C., Stutter, M., Verburg, P. H., Wilfert, P., Williams, P. N. & Metson, G., Jul 2019, In : Environmental Science and Technology. 53, 15, p. 8479-8481 3 p.

Research output: Contribution to journalComment/debateResearchpeer-review

1 Citation (Scopus)

NGS and MALDI-TOF species identification of bioaerosols from exposure sampled from a greenhouse worker over six years

Tendal, K., White, J. K., Hansen, V. M., Markouch, A., Jonge, N. D., Lund Nielsen, J., Frederiksen, M. W. & Madsen, A. M., 4 Jun 2019.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

Occupational exposure to microbes found in settling dust in pig farms

White, J. K., Lund Nielsen, J. & Madsen, A. M., 4 Jun 2019.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

On the evolution and physiology of cable bacteria

Kjeldsen, K. U., Schreiber, L., Thorup, C. A., Boesen, T., Bjerg, J. T., Yang, T., Dueholm, M. S., Larsen, S., Risgaard-Petersen, N., Nierychlo, M., Schmid, M., Bøggild, A., Vossenberg, J. V. D., Geelhoed, J. S., Meysman, F. J. R., Wagner, M., Nielsen, P. H., Nielsen, L. P. & Schramm, A., 17 Sep 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 38, p. 19116-19125 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
9 Citations (Scopus)

Polyphosphate-accumulating organisms in full-scale tropical wastewater treatment plants use diverse carbon sources

Qiu, G., Zuniga-Montanez, R., Law, Y., Thi, S. S., Nguyen, T. Q. N., Eganathan, K., Liu, X., Nielsen, P. H., Williams, R. B. H. & Wuertz, S., 1 Feb 2019, In : Water Research. 149, p. 496-510 15 p.

Research output: Contribution to journalJournal articleResearchpeer-review

12 Citations (Scopus)