• Fredrik Bajers Vej 7H

    9220 Aalborg

    Denmark

Research Output 1995 2019

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Book chapter
2019

Caenorhabditis elegans and mass spectrometry as tools to study probiotics and host response

Hesselager, M. O., Mørch, M. G. M., Møller, K. V., Harders, R. H., Bendixen, E. & Olsen, A., Jun 2019, Caenorhabditis elegans and mass spectrometry as tools to study probiotics and host response.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

1 Citation (Scopus)

Climate change impacts on mountain biodiversity

Guisan, A., Broennimann, O., Buri, A., Cianfrani, C., D'Amen, M., Di Cola, V., Fernandes, R., Gray, S., Mateo, R. G., Pinto, E., Pradervand, J-N., Scherrer, D., von Däniken, I., Yashiro, E. & Vittoz, P., Jan 2019, Biodiversity and Climate Change. Yale University Press, p. 221-233 13 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

biodiversity
climate change
mountain
extinction risk
climate
2018

Heterotrophic Production of Phycocyanin in Galdieria sulphuraria

Eriksen, N. T., 2018, Extremophiles: From Biology to Biotechnology. Durvasula, R. V. & Subba Rao, D. V. (eds.). 1 ed. CRC Press, p. 87-101 16 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Sulfur-34S and 36S Stable Isotope Labeling of Amino Acids for Quantification (SULAQ34/36) of Proteome Analyses

Herbst, F-A., Jehmlich, N., von Bergen, M. & Schmidt, F., 2018, Microbial Proteomics: Methods and Protocols. Becher, D. (ed.). Springer, p. 163-174 12 p. (Methods in Molecular Biology, Vol. 1841).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

2016

Amyloids – a neglected child of the slime

Dueholm, M. S. & Nielsen, P. H., 2016, The Perfect Slime: Microbial Extracellular Polymeric Substances (EPS). Flemming, H-C., Neu, T. R. & Wingender, J. (eds.). London: IWA Publishing, p. 113-133 21 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Microscopy

Nielsen, J. L., Seviour, R. & Nielsen, P. H., 25 Apr 2016, Experimental Methods in Wastewater Treatment. C. M. van Loosdrecht, M., Halkjær Nielsen, P., M. Lopez-Vazquez, C. & Brdjanovic, D. (eds.). IWA Publishing, p. 263-284 22 p. (Water Intelligence Online, Vol. 15).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Molecular methods

Karst, S. M., Albertsen, M., Kirkegaard, R. H., Dueholm, M. S. & Nielsen, P. H., 2016, Experimental methods in wastewater treatment. van Loosdrecht, M. C. M., Halkjær Nielsen, P., Lopez-Vazquez, C. M. & Brdjanovic, D. (eds.). IWA Publishing, p. 285-324 39 p. (Water Intelligence Online).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

2015

Fungal NRPS-dependent siderophores: from function to prediction

Sørensen, J. L., Knudsen, M., T. Hansen, F., Olesen, C., Romans Fuertes, P., V. Lee, T., Søndergaard, T. E., Pedersen, C. S., Brodersen, D. E. & Giese, H., 2015, Biosynthesis and Molecular Genetics of Fungal Secondary Metabolites. Springer Publishing Company, p. 317-339 (Fungal Biology).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Studies of the Ecophysiology of Single Cells in Microbial Communities by (Quantitative) Microautoradiography and Fluorescence In Situ Hybridization (MAR-FISH)

Nierychlo, M., Nielsen, J. L. & Nielsen, P. H., 22 Mar 2015, Hydrocarbon and Lipid Microbiology Protocols: Ultrastructure and Imaging. McGenity, T. J., Timmis, K. N. & Nogales, B. (eds.). Springer, p. 115-130 (Springer Protocols Handbooks).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Fluorescence
Image analysis
Ecosystems
Microscopic examination
Sampling
2014
39 Citations (Scopus)

The Family Saprospiraceae

McIlroy, S. J. & Nielsen, P. H., 2014, The Prokaryotes: Other Major Lineages of Bacteria and The Archaea. Rosenberg, E., Delong, E. F., Lory, S., Stackebrandt, E. & Thompson, F. (eds.). 4 ed. Heidelberg: Springer Science+Business Media, Vol. 11. p. 863-889 27 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

activated sludge
gliding
aquatic environment
hydrolysis
organic compound
2013
10 Citations (Scopus)

Functional Amyloids in Bacteria

Dueholm, M. S., Nielsen, P. H., Chapman, M. & Otzen, D., 27 Jan 2013, Amyloid Fibrils and Prefibrillar Aggregates: Molecular and Biological Properties. Otzen, D. E. (ed.). Wiley-VCH, p. 411-438 28 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Growth in photobioractors

Eriksen, N. T., 2013, Natural and artificial photosynthesis. Razeghifard, R. (ed.). Wiley, p. 285-305 21 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

1 Citation (Scopus)

Heterotrophic Microalgae in Biotechnology

Eriksen, N. T., 2013, Microalgae: biotechnology, Microbiology and Energy. Johansen, M. N. (ed.). Nova Science Publishers, p. 387-412 26 p. (Marien Biology).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Odlade mikroalger till mat - fortfarende in sin linda

Eriksen, N. T., 2013, Havsbruk som håller i längden. Johansson, B. (ed.). Stockholm: Forskningsrådet för miljö, areella näringar och samhällsbyggande, Formas, p. 201-211 11 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterCommunication

2012

Improved Diagnosis of Biofilm Infections Using Various Molecular Methods

Thomsen, T. R., Xu, Y., Lorenzen, J., Nielsen, P. H. & Schønheyder, H. C., 2012, Culture Negative Orthopedic Biofilm Infections. Berlin: Springer, p. 29-41 (Springer Series on Biofilms, Vol. 7).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

25 Citations (Scopus)

Targeted gene replacement in fungal pathogens via agrobacterium tumefaciens-mediated transformation

Frandsen, R. J. N., Frandsen, M. & Giese, H., 1 Jan 2012, Plant Fungal Pathogens: Methods and Protocols. Bolton, M. D. & Thomma, B. P. H. J. (eds.). Springer Publishing Company, p. 17-45 29 p. (Methods in Molecular Biology, Vol. 835).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Pathogens
Cloning
Genes
Network protocols
Fusion reactions
2 Citations (Scopus)

Using UV light to engineer biosensors for cancer detection: the case of prostate specific antigen

Neves-Petersen, M. T., Parracino, A. & Petersen, S. B., 2012, Biosensors and Cancer. Preedy, V. R. & Patel, V. B. (eds.). Science Publishers, p. 378-394

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

UV light effects on proteins: from photochemistry to nanomedicine

Neves-Petersen, M. T., Gajula, G. P. & Petersen, S. B., 2012, Molecular Photochemistry: Various Aspects. Saha, S. (ed.). INTECH, p. 125-158

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

2011

Functional bacterial amyloids in biofilms

Nielsen, P. H., Dueholm, M. S., Thomsen, T. R., Nielsen, J. L. & Otzen, D., 2011, Biofilm Highlights, Springer Series on Biofilms. Flemming, H-C., Szewzyk, U. & Wingender, J. (eds.). Berlin: Springer, Vol. 5. p. 41-62 22 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Influence of Microorganisms on the Healing of Skin Grafts from Chronic Venous Leg Wounds, Skin Grafts - Indications, Applications and Current Research

Wolff, T. Y., Bjarnsholt, T., Kirketerp-Møller, K. & Thomsen, T. R., 2011, Skin Grafts - Indications, Applications and Current Research. Spear, M. (ed.). INTECH

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

9 Citations (Scopus)

The role of bacterial biofilms in infections of catheters and shunts

Thomsen, T. R., Hall-Stoodley, L., Moser, C. & Stoodley, P., 2011, Biofilm Infections. Springer, p. 91-109 19 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

Infection
Biofilm
Stomach
Medication
2010

Microautoradiography (MAR)

Nielsen, P. H. & Nielsen, J. L., 2010, Microbial Ecology of Activated Sludge. Seviour, R. & Nielsen, P. H. (eds.). London: IWA Publishing, p. 393-397 5 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

MICROBIAL COMMUNITIES IN ACTIVATED SLUDGE PLANTS

Seviour, R. J. & Nielsen, P. H., 2010, Microbial Ecology of Activated Sludge. IWA Publishing, p. 95-126 31 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

MICROBIOLOGY OF BULKING

Wanner, J., Kragelund, C. & Nielsen, P. H., 2010, Microbial Ecology of Activated Sludge. Seviour, R. & Nielsen, P. H. (eds.). London: IWA Publishing, p. 191-214 24 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

2009
1 Citation (Scopus)

Activity and stability of proteases in hydrophilic solvents

Pedersen, L. H., Ritthitham, S. & Kristensen, M., 2009, Modern Biocatalysis: Stereo selective and environmentally friendly reactions. Fessner, W-D. & Anthonsen, T. (eds.). 1 ed. Weinheim: Wiley-VCH, p. 55-66 11 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

Identification and quantification of microorganisms in activated sludge and biofilms by FISH: Introduction

Nielsen, P. H., Lemmer, H. & Daims, H., 2009, FISH Handbook for Biological Wastewater Treatment. Halkjær Nielsen, P., Daims, H. & Lemmer, H. (eds.). 1 ed. London: IWA Publishing, p. 1-8

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

Identification of denitrifying microorganisms in activated sludge by FISH

Nielsen, J. L. & Hansen, A. A., 2009, FISH handbook for Biological Wastewater Treatment: Identification and quantification of microorganisms in activated sludge and biofilms by FISH. Nielsen, P., Daims, H. & Lemmer, H. (eds.). 1 ed. London: IWA Publishing, p. 19-24

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

IDENTIFICATION OF FILAMENTOUS BACTERIA BY FISH

Kragelund, C., Müller, E., Schade, M., Thi, T. H. N., Lemmer, H., Seviour, R. & Nielsen, P. H., 2009, FISH Handbook for Biological Wastewater Treatment: Identification and quantification of microorganisms in activated sludge and biofilms by FISH. Halkjaer Nielsen, P., Daims, H. D. & Lemmer, H. (eds.). London: IWA Publishing, p. 33-68

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

Identification of other microorganisms in activated sludge and biofilms by FISH

Nielsen, P. H. & Nielsen, J. L., 2009, FISH Hanbook for Biological Wastewater Treatment: Identification and quantification of microorganisms in activated sludge and biofilms by FISH. Nielsen, P., Daims, H. & Lemmer, H. (eds.). 1 ed. London: IWA Publishing, p. 69-71

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

Identification of Polyphosphate-accumulating and glycogen-accumulating organisms by fish

Nielsen, P. H., Thi, T. H. N., McIlroy, S. J., Mielczarek, A. T. & Seviour, R., 2009, FISH Handbook for Biological Wastewater Treatment: Identification and quantification of microorganisms in activated sludge and biofilms by FISH. Halkjaer Nielsen, P., Daims, H. & Lemmer, H. (eds.). IWA Publishing, p. 25-32

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

Protocol for Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotides

Nielsen, J. L., 2009, FISH Hanbook for Biological Wastewater Treatment: Identification and quantification of microorganisms in activated sludge and biofilms by FISH. Nielsen, P., Daims, H. & Lemmer, H. (eds.). 1 ed. London: IWA Publishing, p. 73-84

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

2008

5’-and 3’-RACE from LongSAGE tags.

Nielsen, K. L., 2008, Serial Analysis of Gene Expression (SAGE) – Methods and protocols. Nielsen, K. L. & Walker, J. M. (eds.). Totowa, New Jersey, USA: Humana Press, p. 109-119 (Methods in Molecular Biology; No. 387).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

9 Citations (Scopus)

DeepSAGE-Higher Sensitivity and Multiplexing of Samples Using a Simpler Experimental Protocol

Nielsen, K. L., 2008, Serial Analysis of Gene Expression (SAGE) – Methods and Protocols. Nielsen, K. L. & Walker, J. M. (eds.). Totowa, New Jersey, USA: Humana Press, p. 81-93 13 p. (Methods in Molecular Biology; No. 387).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

6 Citations (Scopus)

DeepSAGE – tag based transcriptome analysis beyond microarrays.

Nielsen, K. L., Petersen, A. H. & Emmersen, J., 2008, Next generation genome sequencing - towards personalized medicine. Janitz, M. (ed.). Berlin, Germany: Wiley-VCH

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

1 Citation (Scopus)

Extraction and Annotation of SAGE tags using Sequence Quality values

Emmersen, J., 2008, Methods in Molecular Biology: Serial Analysis of Gene Expression (SAGE) – Digital Gene Expression Profiling. Nielsen, K. L. (ed.). Humana Press

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

Low Cost Medium Throughput Sanger Dideoxy-Sequencing.

Nielsen, K. L., 2008, Methods in molecular biology: Serial Analysis of Gene Expression (SAGE) – Methods and Protocols.. Nielsen, K. L. & Walker, J. M. (eds.). Totowa, New Jersey, USA: Humana Press, Vol. 387. p. 71-80 10 p. (Methods in Molecular Biology; No. 387).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

2006

Chromatin-associated architectural HMGA and HMGB proteins assist transcription factor function

Grasser, K. D. & Launholt, D., 2006, Regulation of Transcription in Plants. Grasser, K. D. (ed.). Oxford, UK: IEEE Press, (Annual Plant Reviews, Vol. 29).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

Generating Unigene collections of EST sequences for use in MS identification

Emmersen, J., 2006, Mass Spectrometry Data Analysis in Proteomics: Methods in Molecular Biology. Matthiesen, R. (ed.). Totowa, N.J.: Humana Press, (Methods in Molecular Biology; No. 367).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

2005
1 Citation (Scopus)

Phosphorylation-specific analysis strategies for Mass Spectrometry: Enhanced detection of phosphorylated proteins and peptides

Stensballe, A., 2005, Proteomics & Peptidomics. Marko-Varga, G. (ed.). Amsterdam: Pergamon Press, p. 277-351 74 p. (Wilson & Wilson's Comprehensive Analytical Chemistry, Vol. 46).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

2004

Plant chromosomal high mobility group (HMG) proteins of the HMGA and the HMGB families

Lichota, J., Grønlund, J. T., Lauenholt, D. & Grasser, K. D., 2004, Recent Res. Dev. Agronomy & Horticulture. p. 135-155 11 p. (Recent Res. Dev. Agronomy & Horticulture; No. 1).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

2002

Folding of the a-helical membrane proteins DsbB and NhaA

Otzen, D., 2002, Biophysical Chemistry : Membranes and Proteins. Sedden, J. (ed.) (ed.). London: Royal Society of Chemistry

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

2001

Biotechnology in Denmark

Pedersen, L. H., 2001, BioCommerce Data's Biotechnology Company Compendium. Helen Smith (ed.) (ed.). Richmond: Surrey

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearch

1999

Influence of microbial activity on the stability of activated sludge flocs

Wilen, B. M., Nielsen, J. L., Keiding, K. & Nielsen, P. H., 1 Dec 1999, Influence of microbial activity on the stability of activated sludge flocs. 1541 ed. p. 1-18 18 p. (Doktorsavhandlingar vid Chalmers Tekniska Hogskola).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

anoxic conditions
microbial activity
activated sludge
iron-reducing bacterium
nitrate