Tue Bjerg Bennike

PhD in Inflammatory Diseases, MSc in Nanobiotechnology, BSc in Nanotechnology

  • Phone+45 9814 1818, +45 9940 7180, +45 2613 9003
  • Emailtbe@hst.aau.dk
  • Website
  • Fredrik Bajers Vej 7, E4-112

    9220 Aalborg Ø

    Denmark

20112022
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Research Output 2012 2019

2019
1 Citation (Scopus)
6 Downloads (Pure)

Data from quantitative serum proteomic analysis after laparoscopic gastric plication

Savedoroudi, P., Bennike, T. B., Kastaniegaard, K., Talebpour, M., Ghassempour, A. & Stensballe, A., 1 Aug 2019, In : Data in Brief. 25, 8 p., 104077.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Proteomics
Stomach
Serum
Bariatric Surgery
Proteome
39 Downloads (Pure)

Degradation of the extracellular matrix is part of the pathology of ulcerative colitis

Kirov, S., Sasson, A., Zhang, C., Chasalow, S., Dongre, A., Steen, H., Stensballe, A., Andersen, V., Birkelund, S. & Bennike, T. B., 31 Jan 2019, In : Molecular Omics. 15, 1, p. 67-76 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Pathology
Ulcerative Colitis
Proteomics
Extracellular Matrix
Degradation
11 Citations (Scopus)
2 Downloads (Pure)

Dynamic molecular changes during the first week of human life follow a robust developmental trajectory

Lee, A. H., Shannon, C. P., Amenyogbe, N., Bennike, T. B., Diray-Arce, J., Idoko, O. T., Gill, E. E., Ben-Othman, R., Pomat, W. S., van Haren, S. D., Cao, K. A. L., Cox, M., Darboe, A., Falsafi, R., Ferrari, D., Harbeson, D. J., He, D., Bing, C., Hinshaw, S. J., Ndure, J. & 24 others, Njie-Jobe, J., Pettengill, M. A., Richmond, P. C., Ford, R., Saleu, G., Masiria, G., Matlam, J. P., Kirarock, W., Roberts, E., Malek, M., Sanchez-Schmitz, G., Singh, A., Angelidou, A., Smolen, K. K., The EPIC Consortium, Brinkman, R. R., Ozonoff, A., Hancock, R. E. W., van den Biggelaar, A. H. J., Steen, H., Tebbutt, S. J., Kampmann, B., Levy, O. & Kollmann, T. R., 12 Mar 2019, In : Nature Communications. 10, 1, 14 p., 1092.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Systems Biology
Molecular Dynamics Simulation
biology
Molecular dynamics
Trajectories

Ontogeny of the plasma proteome during the first week of life

Bennike, T. B., Fatou, B., Wurie, Z., Idoko, O. T., Kampmann, B., Levy, O. & Steen, H., 27 Mar 2019.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

Proteome
Immune System
Parturition
Gambia
Papua New Guinea
1 Citation (Scopus)

Serum proteome changes and accelerated reduction of fat mass after laparoscopic gastric plication in morbidly obese patients

Savedoroudi, P., Bennike, T. B., Kastaniegaard, K., Talebpour, M., Ghassempour, A. & Stensballe, A., 15 Jul 2019, In : Journal of Proteomics. 203, 103373.

Research output: Contribution to journalJournal articleResearchpeer-review

Proteome
Surgery
Stomach
Fats
Weight Loss
2018
6 Citations (Scopus)

A Cost-Effective High-Throughput Plasma and Serum Proteomics Workflow Enables Mapping of the Molecular Impact of Total Pancreatectomy with Islet Autotransplantation

Bennike, T. B., Bellin, M. D., Xuan, Y., Stensballe, A., Møller, F. T., Beilman, G. J., Levy, O., Cruz-Monserrate, Z., Andersen, V., Steen, J., Conwell, D. L. & Steen, H., 19 Apr 2018, In : Journal of Proteome Research. 17, 5, p. 1983-1992 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
Pancreatectomy
Workflow
Autologous Transplantation
Proteomics
Throughput

Clinical proteomics - Advances in proteomics and protein arrays for personalized and precision medicine

Poulsen, T. B. G., Meyer, M. K., Kastaniegaard, K., Bastrup, J., Bennike, T. B. & Stensballe, A., 15 May 2018, Systems Biology of Synovialis from Rheumatoid Arthritis and Osteoarthritis Patients Reveals Site-Specific Pathology.

Research output: Contribution to book/anthology/report/conference proceedingConference abstract in proceedingResearch

Degradation of the extracellular matrix is part of the pathology of ulcerative colitis

Kirov, S., Sasson, A., Zhang, C., Chasalow, S., Dongre, A., Steen, H., Stensballe, A., Andersen, V., Birkelund, S. & Bennike, T. B., 10 Sep 2018, bioRxiv.

Research output: Working paperResearch

Open Access
Ulcerative Colitis
Proteomics
Extracellular Matrix
Pathology
Extracellular Matrix Proteins

Developing a Serum Proteomics Pipeline for the Mapping of TPIAT-induced Changes to the Serum Proteome

Bellin, M., Bennike, T. B., Ahmed, S., Cruz-Monserrate, Z., Beilman, G., Conwell, D. & Steen, H., 31 Oct 2018, p. P1-64.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

3 Citations (Scopus)
129 Downloads (Pure)

Impact of red and processed meat and fibre intake on treatment outcomes among patients with chronic inflammatory diseases: protocol for a prospective cohort study of prognostic factors and personalised medicine

Christensen, R., Heitmann, B. L., Andersen, K. W., Nielsen, O. H., Sørensen, S. B., Jawhara, M., Bygum, A., Hvid, L., Grauslund, J., Wied, J., Glerup, H., Fredberg, U., Villadsen, J. A., Kjær, S. G., Fallingborg, J., Moghadd, S. A. G. R., Knudsen, T., Brodersen, J., Frøjk, J., Dahlerup, J. F. & 21 others, Bojesen, A. B., Sorensen, G. L., Thiel, S., Færgeman, N. J., Brandslund, I., Bennike, T. B., Stensballe, A., Schmidt, E. B., Franke, A., Ellinghaus, D., Rosenstiel, P., Raes, J., Boye, M., Werner, L., Nielsen, C. L., Munk, H. L., Nexøe, A. B., Ellingsen, T., Holmskov, U., Kjeldsen, J. & Andersen, V., 1 Feb 2018, In : BMJ Open. 8, 2, 15 p., e018166.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Precision Medicine
Chronic Disease
Cohort Studies
Prospective Studies
Life Style

Investigating the Urinary Proteome pre and post Total Pancreatectomy with Islet Autotransplantation(TPIAT)

Bellin, M., Bennike, T. B., Ahmed, S., Cruz-Monserrate, Z., Arora, R., Beilman, G., Arnaout, R., Conwell, D. & Steen, H., 31 Oct 2018, p. P1-65.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

Taking a first Peek at the Ontogeny of the Plasma Proteome during the first week of life

Bennike, T. B., 29 Jan 2018.

Research output: Contribution to conference without publisher/journalPosterResearch

Systems Biology
Proteome
Cause of Death
Immune System
Health
2017
2 Citations (Scopus)

High-throughput parallel proteomic sample preparation using 96-well polyvinylidene fluoride (PVDF) membranes and C18 purification plates

Bennike, T. B. & Steen, H., 2017, Serum/Plasma Proteomics: Methods and Protocols. Greening, D. W. & Simpson, R. J. (eds.). 2 ed. Humana Press, p. 395-402 (Methods in Molecular Biology; No. 1619).

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

11 Citations (Scopus)

Proteome analysis of rheumatoid arthritis gut mucosa

Bennike, T. B., Ellingsen, T., Glerup, H., Bonderup, O. K., Carlsen, T. G., Meyer, M. K., Bøgsted, M., Christiansen, G., Birkelund, S., Andersen, V. & Stensballe, A., 2017, In : Journal of Proteome Research. 16, 1, p. 346-354

Research output: Contribution to journalJournal articleResearchpeer-review

Proteome
Rheumatoid Arthritis
Mucous Membrane
Tetrahydrofolate Dehydrogenase
Biopsy
2 Citations (Scopus)
126 Downloads (Pure)

Proteomics dataset: The colon mucosa from inflammatory bowel disease patients, gastrointestinal asymptomic rheumatoid arthritis patients, and controls

Bennike, T. B., Carlsen, T. G., Ellingsen, T., Bonderup, O. K., Glerup, H., Bøgsted, M., Christiansen, G., Birkelund, S., Andersen, V. & Stensballe, A., Dec 2017, In : Data in Brief. 15, p. 511-516 6 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Inflammatory Bowel Diseases
Proteomics
Rheumatoid Arthritis
Colon
Mucous Membrane
Open Access
Immune Tolerance
Joint Diseases
Post Translational Protein Processing
Rheumatoid Arthritis
Colon
2016

Assessing the Role of Citrullination and Lipid Interaction with Myelin Basic Protein in Multiple Sclerosis Etiology

Kastaniegaard, K., Bennike, T. B., Nielsen, S., Stensballe, A. & Nieland, J. D., 2 Jun 2016.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

Open Access
16 Citations (Scopus)
113 Downloads (Pure)

Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V. & Stensballe, A., 2016, In : EuPA Open Proteomics. 10, p. 9-18

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Proteome
Paraffin
Formaldehyde
Biopsy
Tissue
12 Citations (Scopus)
238 Downloads (Pure)

Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V. & Stensballe, A., 2016, In : Data in Brief. 6, p. 942-947

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Proteome
Paraffin
Formaldehyde
Colon
Biopsy

Strategies for biological drug quantification in biological drug immune responses

Meyer, M. K., Andersen, M., Stausbo, T. V., Bennike, T. B., Andersen, G. N. & Stensballe, A., 2016.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

Open Access
Pharmaceutical Preparations
26 Citations (Scopus)

The Pig PeptideAtlas: a resource for systems biology in animal production and biomedicine

Hesselager, M. O., Codrea, M. C., Sun, Z., Deutsch, E. W., Bennike, T. B., Stensballe, A., Bundgaard, L., Moritz, R. L. & Bendixen, E., 2016, In : Proteomics. 16, 4, p. 634-644

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
Systems Biology
Animals
Swine
Proteome
Proteomics
70 Downloads (Pure)

Therapeutic drug quantification using targeted mass spectrometry

Meyer, M. K., Andersen, M., Stausbo, T. V., Bennike, T. B., Andersen, G. N. & Stensballe, A., 2016.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

Open Access
File
2 Citations (Scopus)
200 Downloads (Pure)

Time-course investigation of Phytophthora infestans infection of potato leaf from three cultivars by quantitative proteomics

Larsen, M. K. G., Jørgensen, M., Bennike, T. B. & Stensballe, A., 2016, In : Data in Brief. 6, p. 238-248

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2015
1 Citation (Scopus)
351 Downloads (Pure)

Characterization of the porcine synovial fluid proteome and a comparison to the plasma proteome

Bennike, T. B., Barnaby, O., Steen, H. & Stensballe, A., 2015, In : Data in Brief. 5, p. 241-247

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Synovial Fluid
Proteome
Swine
Proteomics
Joint Diseases
317 Downloads (Pure)

Effect of IL-6R Inhibition with Tocilizumab on the Proteome of Peripheral Blood Mononuclear Cells from a Rheumatoid Arthritis Patient

Meyer, M. K., Andersen, M., Bennike, T. B., Birkelund, S., Andersen, G. N. & Stensballe, A., 2015, In : Journal of Proteomics & Bioinformatics. 8, 12, p. 274-282

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
738 Downloads (Pure)

Inflammatory Diseases – An Analysis of the Underlying Biological Triggers

Bennike, T. B., 2015, Aalborg Universitetsforlag. (Ph.d.-serien for Det Teknisk-Naturvidenskabelige Fakultet, Aalborg Universitet).

Research output: Book/ReportPh.D. thesisResearch

Open Access
File
31 Downloads (Pure)

Neutrophil extracellular traps in ulcerative colitis: A proteome analysis of intestinal biopsies

Bennike, T. B., Carlsen, T. G., Ellingsen, T., Bonderup, O. K., Glerup, H., Bøgsted, M., Christiansen, G., Birkelund, S., Stensballe, A. & Andersen, V., 2015, Proceedings, Targeted Proteomics Workshop & International Symposium, TPWIS 2015, 10-14 December 2015, Mumbai, India. Indian Institute of Technology, p. 97-98, No. D-1-07

Research output: Contribution to book/anthology/report/conference proceedingConference abstract in proceedingResearchpeer-review

Open Access
File
45 Citations (Scopus)
287 Downloads (Pure)

Neutrophil extracellular traps in ulcerative colitis: a proteome analysis of intestinal biopsies

Bennike, T. B., Carlsen, T. G., Ellingsen, T., Bonderup, O. K., Glerup, H., Bøgsted, M., Christiansen, G., Birkelund, S., Stensballe, A. & Andersen, V., 2015, In : Inflammatory Bowel Diseases. 21, 9, p. 2052-2067

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Proteome
Ulcerative Colitis
Biopsy
Colon
Leukocyte L1 Antigen Complex
9 Citations (Scopus)

Neutrophil extracellular traps in ulcerative colitis: a proteome analysis of intestinal biopsies

Bennike, T. B., Carlsen, T. G., Ellingsen, T., Bonderup, O. K., Glerup, H., Bøgsted, M., Christiansen, G., Birkelund, S., Stensballe, A. & Andersen, V., 2015, Congress Abstract Book, 14th Human Proteome Organization World Congress, HUPO2015, 27-30 September 2015, Vancouver, Canada. Human Proteome Organization, p. 25, No. CS07.05

Research output: Contribution to book/anthology/report/conference proceedingConference abstract in proceedingResearchpeer-review

Optimized clinical use of RNAlater and FFPE samples for quantitative proteomics

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Birkelund, S., Andersen, V. & Stensballe, A., 2015, Congress Abstract Book, 14th Human Proteome Organization World Congress, HUPO2015, 27-30 September 2015, Vancouver, Canada. Human Proteome Organization, p. 80-81, No. CS24.10

Research output: Contribution to book/anthology/report/conference proceedingConference abstract in proceedingResearchpeer-review

Optimized Clinical Use of RNALater and FFPE Samples for Quantitative Proteomics

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Birkelund, S., Andersen, V. & Stensballe, A., 27 Sep 2015.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

Paraffin
Proteomics
Formaldehyde
Proteome
Post Translational Protein Processing

Protein citrullination: Novel insight into triggers of autoimmune diseases

Bennike, T. B., Meyer, M. K., Kastaniegaard, K., Andersen, V., Birkelund, S. & Stensballe, A., 2015, Congress Abstract Book, 14th Human Proteome Organization World Congress, HUPO2015, 27-30 September 2015, Vancouver, Canada. Human Proteome Organization, p. 67, No. CS20.08

Research output: Contribution to book/anthology/report/conference proceedingConference abstract in proceedingResearchpeer-review

2014
29 Citations (Scopus)

A normative study of the synovial fluid proteome from healthy porcine knee joints

Bennike, T., Ayturk, U., Haslauer, C. M., Froehlich, J. W., Proffen, B. L., Barnaby, O., Birkelund, S., Murray, M. M., Warman, M. L., Stensballe, A. & Steen, H., 2014, In : Journal of Proteome Research. 13, 10, p. 4377–4387

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
49 Citations (Scopus)

Biomarkers in inflammatory bowel diseases: current status and proteomics identification strategies

Bennike, T., Birkelund, S., Stensballe, A. & Andersen, V., 2014, In : World Journal of Gastroenterology. 20, 12, p. 3231-3244 14 p.

Research output: Contribution to journalReview articleResearchpeer-review

Open Access
Inflammatory Bowel Diseases
Proteomics
Biomarkers
Ulcerative Colitis
Crohn Disease
2 Citations (Scopus)

Condenser: a statistical aggregation tool for multi-sample quantitative proteomic data from Matrix Science Mascot Distiller™

Knudsen, A. D., Bennike, T., Kjeldal, H., Birkelund, S., Otzen, D. E. & Stensballe, A., 2014, In : Journal of Proteomics. 103, p. 261–266 6 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Improved method for sequencing of immunoglobulin molecules: combining next generation sequencing and ms/ms

Birkelund, S., Stehr, A. M., Bennike, T. B., Christiansen, G., Sønderkær, M., Nielsen, K. L. & Stensballe, A., 2014.

Research output: Contribution to conference without publisher/journalPosterResearch

Inflammatory bowel diseases: a clinical proteomics study seeking to identify the underlying biological triggers

Bennike, T. B., Carlsen, T. G., Sennels, L., Andersen, V., Birkelund, S. & Stensballe, A., 2014.

Research output: Contribution to conference without publisher/journalPosterResearch

Inflammatory joint- and bowel diseases: a clinical proteomics study seeking to identify the underlying biological triggers

Bennike, T., Carlsen, T. G., Sennels, L., Lauridsen, K., Glerup, H., Bonderup, O. K., Ellingsen, T. J., Vogel, L., Andersen, V., Birkelund, S. & Stensballe, A., 2014.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

21 Citations (Scopus)

Inflammatory joint- and bowel diseases: a clinical proteomics study seeking to identify the underlying biological triggers

Bennike, T. B., Carlsen, T. G., Sennels, L., Lauridsen, K. B., Glerup, H., Bonderup, O. K., Ellingsen, T. J., Vogel, L., Andersen, V., Birkelund, S. & Stensballe, A., 2014, In : Journal of Crohn's and Colitis. 8, Suppl. 1, p. S147

Research output: Contribution to journalConference abstract in journalResearchpeer-review

271 Downloads (Pure)

Optimizing the identification of citrullinated peptides by mass spectrometry: Utilizing the inability of trypsin to cleave after citrullinated amino acids

Bennike, T., Lauridsen, K., Olesen, M. K., Andersen, V., Birkelund, S. & Stensballe, A., 2014. 1 p.

Research output: Contribution to conference without publisher/journalPosterResearch

Open Access
File

Unfiltered beer: a rich source of yeast extracellular vesicles

Stensballe, A. & Bennike, T., 2014, In : Journal of Extracellular Vesicles. 3, p. 27, No. OP2-121 24214.

Research output: Contribution to journalConference abstract in journalResearchpeer-review

2013

A role for anti-HSP60 antibodies in arthritis: a critical review

Carlsen, T. G., Bennike, T., Christiansen, G. & Birkelund, S., 2013, In : OA Arthritis. 1, 2, 14.

Research output: Contribution to journalReview articleResearchpeer-review

Condenser: a statistical aggregation tool for multi-sample quantitative proteomic data

Knudsen, A., Bennike, T., Kjeldal, H., Birkelund, S., Otzen, D. & Stensballe, A., 2013, HUPO 12th Annual World Congress, Abstracts, 14-18 September 2013, Yokohama, Japan. Human Proteome Organisation, HUPO, p. 130, No. POS-01-275

Research output: Contribution to book/anthology/report/conference proceedingConference abstract in proceedingResearch

Impaired tryptic proteolytic activity at citrullinated amino acids

Bennike, T., Lauritsen, K. B., Andersen, V., Birkelund, S. & Stensballe, A., 2013, HUPO 12th Annual World Congress, Abstracts, 14-18 September 2013, Yokohama, Japan. Human Proteome Organisation, HUPO, p. 218, No. POS-03-056

Research output: Contribution to book/anthology/report/conference proceedingConference abstract in proceedingResearchpeer-review

132 Downloads (Pure)

Impaired Tryptic Proteolytic Activity at Citrullinated Amino Acids

Bennike, T., Lauridsen, K., Andersen, V., Birkelund, S. & Stensballe, A., 23 Jun 2013.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

Open Access
File

Impaired Tryptic Proteolytic Activity at Citrullinated Amino Acids v2

Bennike, T., Lauridsen, K., Andersen, V., Birkelund, S. & Stensballe, A., 17 Sep 2013.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

23 Citations (Scopus)

Optimizing the identification of citrullinated peptides by mass spectrometry: utilizing the inability of trypsin to cleave after citrullinated amino acids

Bennike, T., Lauridsen, K. B., Olesen, M. K., Andersen, V., Birkelund, S. & Stensballe, A., 15 Dec 2013, In : Journal of Proteomics & Bioinformatics. 6, 12, p. 288-295 8 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Trypsin
Peptides
Mass spectrometry
Amino acids
Mass Spectrometry
34 Downloads (Pure)

Specific Detection of Citrullinated Peptides on the Q-Exactive MS using Neutral Loss Triggered Precursor Selection

Bennike, T., Birkelund, S., Andersen, V. & Stensballe, A., 22 Feb 2013.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

Open Access
File
2012
32 Downloads (Pure)

Specific Detection of Citrullinated Peptides on the Q-Exactive MS using Neutral Loss Triggered Precursor Selection

Bennike, T., Birkelund, S., Andersen, V. & Stensballe, A., 2012.

Research output: Contribution to conference without publisher/journalPosterResearch

File