Tue Bjerg Bennike

PhD in Inflammatory Diseases, MSc in Nanobiotechnology, BSc in Nanotechnology

  • Phone+45 9814 1818, +45 9940 7180, +45 2613 9003
  • Emailtbe@hst.aau.dk
  • Website
  • Fredrik Bajers Vej 7, E4-112

    9220 Aalborg Ø

    Denmark

20112022
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Research Output 2012 2019

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Journal article
2019
1 Citation (Scopus)
6 Downloads (Pure)

Data from quantitative serum proteomic analysis after laparoscopic gastric plication

Savedoroudi, P., Bennike, T. B., Kastaniegaard, K., Talebpour, M., Ghassempour, A. & Stensballe, A., 1 Aug 2019, In : Data in Brief. 25, 8 p., 104077.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Proteomics
Stomach
Serum
Bariatric Surgery
Proteome
40 Downloads (Pure)

Degradation of the extracellular matrix is part of the pathology of ulcerative colitis

Kirov, S., Sasson, A., Zhang, C., Chasalow, S., Dongre, A., Steen, H., Stensballe, A., Andersen, V., Birkelund, S. & Bennike, T. B., 31 Jan 2019, In : Molecular Omics. 15, 1, p. 67-76 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Pathology
Ulcerative Colitis
Proteomics
Extracellular Matrix
Degradation
11 Citations (Scopus)
2 Downloads (Pure)

Dynamic molecular changes during the first week of human life follow a robust developmental trajectory

Lee, A. H., Shannon, C. P., Amenyogbe, N., Bennike, T. B., Diray-Arce, J., Idoko, O. T., Gill, E. E., Ben-Othman, R., Pomat, W. S., van Haren, S. D., Cao, K. A. L., Cox, M., Darboe, A., Falsafi, R., Ferrari, D., Harbeson, D. J., He, D., Bing, C., Hinshaw, S. J., Ndure, J. & 24 others, Njie-Jobe, J., Pettengill, M. A., Richmond, P. C., Ford, R., Saleu, G., Masiria, G., Matlam, J. P., Kirarock, W., Roberts, E., Malek, M., Sanchez-Schmitz, G., Singh, A., Angelidou, A., Smolen, K. K., The EPIC Consortium, Brinkman, R. R., Ozonoff, A., Hancock, R. E. W., van den Biggelaar, A. H. J., Steen, H., Tebbutt, S. J., Kampmann, B., Levy, O. & Kollmann, T. R., 12 Mar 2019, In : Nature Communications. 10, 1, 14 p., 1092.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Systems Biology
Molecular Dynamics Simulation
biology
Molecular dynamics
Trajectories
1 Citation (Scopus)

Serum proteome changes and accelerated reduction of fat mass after laparoscopic gastric plication in morbidly obese patients

Savedoroudi, P., Bennike, T. B., Kastaniegaard, K., Talebpour, M., Ghassempour, A. & Stensballe, A., 15 Jul 2019, In : Journal of Proteomics. 203, 103373.

Research output: Contribution to journalJournal articleResearchpeer-review

Proteome
Surgery
Stomach
Fats
Weight Loss
2018
6 Citations (Scopus)

A Cost-Effective High-Throughput Plasma and Serum Proteomics Workflow Enables Mapping of the Molecular Impact of Total Pancreatectomy with Islet Autotransplantation

Bennike, T. B., Bellin, M. D., Xuan, Y., Stensballe, A., Møller, F. T., Beilman, G. J., Levy, O., Cruz-Monserrate, Z., Andersen, V., Steen, J., Conwell, D. L. & Steen, H., 19 Apr 2018, In : Journal of Proteome Research. 17, 5, p. 1983-1992 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
Pancreatectomy
Workflow
Autologous Transplantation
Proteomics
Throughput
3 Citations (Scopus)
132 Downloads (Pure)

Impact of red and processed meat and fibre intake on treatment outcomes among patients with chronic inflammatory diseases: protocol for a prospective cohort study of prognostic factors and personalised medicine

Christensen, R., Heitmann, B. L., Andersen, K. W., Nielsen, O. H., Sørensen, S. B., Jawhara, M., Bygum, A., Hvid, L., Grauslund, J., Wied, J., Glerup, H., Fredberg, U., Villadsen, J. A., Kjær, S. G., Fallingborg, J., Moghadd, S. A. G. R., Knudsen, T., Brodersen, J., Frøjk, J., Dahlerup, J. F. & 21 others, Bojesen, A. B., Sorensen, G. L., Thiel, S., Færgeman, N. J., Brandslund, I., Bennike, T. B., Stensballe, A., Schmidt, E. B., Franke, A., Ellinghaus, D., Rosenstiel, P., Raes, J., Boye, M., Werner, L., Nielsen, C. L., Munk, H. L., Nexøe, A. B., Ellingsen, T., Holmskov, U., Kjeldsen, J. & Andersen, V., 1 Feb 2018, In : BMJ Open. 8, 2, 15 p., e018166.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Precision Medicine
Chronic Disease
Cohort Studies
Prospective Studies
Life Style
2017
11 Citations (Scopus)

Proteome analysis of rheumatoid arthritis gut mucosa

Bennike, T. B., Ellingsen, T., Glerup, H., Bonderup, O. K., Carlsen, T. G., Meyer, M. K., Bøgsted, M., Christiansen, G., Birkelund, S., Andersen, V. & Stensballe, A., 2017, In : Journal of Proteome Research. 16, 1, p. 346-354

Research output: Contribution to journalJournal articleResearchpeer-review

Proteome
Rheumatoid Arthritis
Mucous Membrane
Tetrahydrofolate Dehydrogenase
Biopsy
2 Citations (Scopus)
126 Downloads (Pure)

Proteomics dataset: The colon mucosa from inflammatory bowel disease patients, gastrointestinal asymptomic rheumatoid arthritis patients, and controls

Bennike, T. B., Carlsen, T. G., Ellingsen, T., Bonderup, O. K., Glerup, H., Bøgsted, M., Christiansen, G., Birkelund, S., Andersen, V. & Stensballe, A., Dec 2017, In : Data in Brief. 15, p. 511-516 6 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Inflammatory Bowel Diseases
Proteomics
Rheumatoid Arthritis
Colon
Mucous Membrane
Open Access
Immune Tolerance
Joint Diseases
Post Translational Protein Processing
Rheumatoid Arthritis
Colon
2016
16 Citations (Scopus)
113 Downloads (Pure)

Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V. & Stensballe, A., 2016, In : EuPA Open Proteomics. 10, p. 9-18

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Proteome
Paraffin
Formaldehyde
Biopsy
Tissue
12 Citations (Scopus)
238 Downloads (Pure)

Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V. & Stensballe, A., 2016, In : Data in Brief. 6, p. 942-947

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Proteome
Paraffin
Formaldehyde
Colon
Biopsy
26 Citations (Scopus)

The Pig PeptideAtlas: a resource for systems biology in animal production and biomedicine

Hesselager, M. O., Codrea, M. C., Sun, Z., Deutsch, E. W., Bennike, T. B., Stensballe, A., Bundgaard, L., Moritz, R. L. & Bendixen, E., 2016, In : Proteomics. 16, 4, p. 634-644

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
Systems Biology
Animals
Swine
Proteome
Proteomics
2 Citations (Scopus)
202 Downloads (Pure)

Time-course investigation of Phytophthora infestans infection of potato leaf from three cultivars by quantitative proteomics

Larsen, M. K. G., Jørgensen, M., Bennike, T. B. & Stensballe, A., 2016, In : Data in Brief. 6, p. 238-248

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2015
1 Citation (Scopus)
354 Downloads (Pure)

Characterization of the porcine synovial fluid proteome and a comparison to the plasma proteome

Bennike, T. B., Barnaby, O., Steen, H. & Stensballe, A., 2015, In : Data in Brief. 5, p. 241-247

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Synovial Fluid
Proteome
Swine
Proteomics
Joint Diseases
320 Downloads (Pure)

Effect of IL-6R Inhibition with Tocilizumab on the Proteome of Peripheral Blood Mononuclear Cells from a Rheumatoid Arthritis Patient

Meyer, M. K., Andersen, M., Bennike, T. B., Birkelund, S., Andersen, G. N. & Stensballe, A., 2015, In : Journal of Proteomics & Bioinformatics. 8, 12, p. 274-282

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
45 Citations (Scopus)
289 Downloads (Pure)

Neutrophil extracellular traps in ulcerative colitis: a proteome analysis of intestinal biopsies

Bennike, T. B., Carlsen, T. G., Ellingsen, T., Bonderup, O. K., Glerup, H., Bøgsted, M., Christiansen, G., Birkelund, S., Stensballe, A. & Andersen, V., 2015, In : Inflammatory Bowel Diseases. 21, 9, p. 2052-2067

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
Proteome
Ulcerative Colitis
Biopsy
Colon
Leukocyte L1 Antigen Complex
2014
29 Citations (Scopus)

A normative study of the synovial fluid proteome from healthy porcine knee joints

Bennike, T., Ayturk, U., Haslauer, C. M., Froehlich, J. W., Proffen, B. L., Barnaby, O., Birkelund, S., Murray, M. M., Warman, M. L., Stensballe, A. & Steen, H., 2014, In : Journal of Proteome Research. 13, 10, p. 4377–4387

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
2 Citations (Scopus)

Condenser: a statistical aggregation tool for multi-sample quantitative proteomic data from Matrix Science Mascot Distiller™

Knudsen, A. D., Bennike, T., Kjeldal, H., Birkelund, S., Otzen, D. E. & Stensballe, A., 2014, In : Journal of Proteomics. 103, p. 261–266 6 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2013
23 Citations (Scopus)

Optimizing the identification of citrullinated peptides by mass spectrometry: utilizing the inability of trypsin to cleave after citrullinated amino acids

Bennike, T., Lauridsen, K. B., Olesen, M. K., Andersen, V., Birkelund, S. & Stensballe, A., 15 Dec 2013, In : Journal of Proteomics & Bioinformatics. 6, 12, p. 288-295 8 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Trypsin
Peptides
Mass spectrometry
Amino acids
Mass Spectrometry