Hans Linde Nielsen

Research output

Research output per year 2009 2013 2015 2016 2017 2020 2021 2022 2023 2023

• 67 Journal article
• 13 Conference abstract for conference
• 13 Poster
• 5 Conference abstract in journal
• 9 More
  • 4 Conference abstract in proceeding
  • 1 Report
  • 1 Comment/debate
  • 1 Letter
  • 1 Review article
  • 1 Net publication - Internet publication

Research output per year

Research output per year

Search results

• 2023

  Attainment of target antibiotic levels by oral treatment of left-sided infective endocarditis: a POET substudy

  Bock, M., Theut, A. M., van Hasselt, J. G. C., Wang, H., Fuursted, K., Høiby, N., Lerche, C. J., Ihlemann, N., Gill, S., Christiansen, U., Nielsen, H. L., Lemming, L., Elming, H., Povlsen, J. A., Bruun, N. E., Høfsten, D., Fosbøl, E. L., Køber, L., Schultz, M., Pries-Heje, M. M., & 9 othersKristensen, J. H., Christensen, J. J., Rosenvinge, F. S., Pedersen, C. T., Helweg-Larsen, J., Tønder, N., Iversen, K., Bundgaard, H. & Moser, C., 26 Jul 2023, In: Clinical Infectious Diseases. 77, 2, p. 242-251 10 p., ciad168.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Bacterial Endocarditis 100%
  • Endocarditis 100%
  • Antibiotics 100%
  • Antibiotic Agent 80%
  • Pharmacokinetics 80%
  1 Citation (Scopus)

• Campylobacter concisus from chronic inflammatory bowel diseases stimulates IL-8 production in HT-29 cells

  Yde Aagaard, M. E., Frahm Kirk, K., Linde Nielsen, H., Steffensen, R. & Nielsen, H., 13 Feb 2023, In: Gut Pathogens. 15, 1, 5.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Gastrointestinal Disease 100%
  • Campylobacter Concisus 100%
  • Inflammatory Bowel Disease 100%
  • Cells 100%
  • Phenotype 75%
  1 Citation (Scopus)

  5 Downloads (Pure)

• Evaluating the diagnostic accuracy and clinical utility of 16S and 18S rRNA gene targeted next-generation sequencing based on five years of clinical experience

  Poulsen, S. H., Søgaard, K. K., Fuursted, K. & Nielsen, H. L., 3 Aug 2023, (E-pub ahead of print) In: Scandinavian Journal of Infectious Diseases. 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • RNA 16S 100%
  • Diagnostic Accuracy 100%
  • RNA 18S 100%
  • Next Generation Sequencing 100%
  • Experience 100%

• Herpes simplex virus infection among neonates suspected of invasive bacterial infection: a population-based cohort study

  Dungu, K. H. S., Lund, S., Malchau Carlsen, E. L., Hartling, U. B., Matthesen, A. T., Franck, K. T., Thomsen, M. K., Justesen, U. S., Nielsen, H. L., Nielsen, A. C. Y., Henriksen, T. B. & Nygaard, U., 24 May 2023, (E-pub ahead of print) In: Archives of Disease in Childhood. Fetal and Neonatal Edition. archdischild-2023-325583.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Cohort Analysis 100%
  • Virus Infection 100%
  • Bacterial Infection 100%
  • Herpes Simplex Virus 100%
  • Neonates 100%

• HNA specificity and association to HLA-DRB1 and -DQB1 in patients with autoimmune neutropenia of early childhood

  Kløve-Mogensen, K., Steffensen, R., Nielsen, H. L., Masmas, T. N., Glenthøj, A. B., Jensen, C. F., Haunstrup, T. M., Ratcliffe, P., Höglund, P., Hasle, H. & Nielsen, K. R., Dec 2023, In: Clinical Immunology Communications. 3, p. 31-36

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  15 Downloads (Pure)

• Stigning i fund af infektioner med Cryptosporidium erhvervet i Danmark

  Larsen, T. G., Ethelberg, S., Zangenberg, M., Stensvold, C. R., Kähler, J., Engberg, J., Hartmeyer, G. N., Lützen, L., Nielsen, H. L., Nielsen, L. & Erikstrup, L., 28 Jun 2023, Statens Serum Institut.

  Research output: Other contribution › Net publication - Internet publication › Communication

• The incidence of laboratory-confirmed cases of enteric pathogens in Denmark 2018: a national observational study

  Svendsen, A. T., Nielsen, H. L., Bytzer, P., Coia, J. E., Engberg, J., Holt, H. M., Lemming, L., Lomborg, S., Marmolin, E. S., Olesen, B. S., Andersen, L. P., Ethelberg, S. & Engsbro, A. L., May 2023, In: Infectious Diseases. 55, 5, p. 340-350 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Observational Study 100%
  • Laboratory 100%
  • Incidence 100%
  • Pathogen 100%
  • Species 66%
• 2022

  A rare Danish case of Yersinia pseudotuberculosis pyogenic liver abscess

  Dudina, M., Søgaard, K. K., Deleuran, T., Joensen, K. G., Frøkjær, J. B. & Nielsen, H. L., Oct 2022, In: Clinical Case Reports. 10, 10, 5 p., e6464.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Pyogenic Liver Abscess 100%
  • Yersinia pseudotuberculosis 100%
  • Fatigue 50%
  • Ciprofloxacin 50%
  • Fever 50%
  34 Downloads (Pure)

• Can a humid storage environment of surgical instruments before reprocessing increase patient safety and durability of instruments?

  Rubak, P., Lorenzen, J., Ripadal, K., Christensen, A-E., Aaen, D., Nielsen, H. L. & Bundgaard, K., Apr 2022, In: Journal of Hospital Infection. 122, p. 64-71 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Protein 100%
  • Surgical Instrument 100%
  • Patient Safety 100%
  • Corrosion 100%
  • Therapeutic Procedure 57%
  37 Downloads (Pure)

• COVID-19 contact tracing in the hospitals located in the North Denmark region: A retrospective review

  Fromberg, D., Ank, N. & Nielsen, H. L., Sept 2022, In: Journal of infection prevention. 23, 5, p. 228-234 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Hospital 100%
  • Patient 100%
  • Severe Acute Respiratory Syndrome 50%
  • University Hospital 16%
  • Screening Test 16%
  1 Citation (Scopus)

• Development of metagenomic DNA-sequencing in clinical microbiology diagnostics

  Nielsen, M. E., Søgaard, K. K., Nielsen, H. L. & Albertsen, M., 14 Aug 2022.

  Research output: Contribution to conference without publisher/journal › Conference abstract for conference › Research

• Microscopic Colitis Patients Possess a Perturbed and Inflammatory Gut Microbiota

  Hertz, S., Durack, J., Kirk, K. F., Nielsen, H. L., Lin, D. L., Fadrosh, D., Lynch, K., Piceno, Y., Thorlacius-Ussing, O., Nielsen, H. & Lynch, S. V., Jun 2022, In: Digestive Diseases and Sciences. 67, 6, p. 2433–2443 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Gut Microbiota 100%
  • Microscopic Colitis 100%
  • Patient 100%
  • Intestine Flora 100%
  • Microflora 41%
  8 Citations (Scopus)

• Nanopore metagenomic sequencing of spiked donor blood plasma

  Nielsen, M. E., Søgaard, K. K., Nielsen, H. L. & Albertsen, M., Sept 2022.

  Research output: Contribution to conference without publisher/journal › Conference abstract for conference › Research

• One Day in Denmark: Nationwide point-prevalence survey of human bacterial isolates and comparison of classical and whole-genome sequence-based species identification methods

  Rebelo, A. R., Ibfelt, T., Bortolaia, V., Leekitcharoenphon, P., Hansen, D. S., Nielsen, H. L., Ellermann-Eriksen, S., Kemp, M., Røder, B. L., Frimodt-Møller, N., Søndergaard, T. S., Coia, J. E., Østergaard, C., Pedersen, M., Westh, H. & Aarestrup, F. M., 11 Feb 2022, In: PLoS ONE. 17, 2, e0261999.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Prevalence 100%
  • Species Identification 100%
  • Species 100%
  • Genus 60%
  • Whole Genome Sequencing 60%
  4 Citations (Scopus)

  14 Downloads (Pure)

• One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings

  Rebelo, A. R., Bortolaia, V., Leekitcharoenphon, P., Hansen, D. S., Nielsen, H. L., Ellermann-Eriksen, S., Kemp, M., Røder, B. L., Frimodt-Møller, N., Søndergaard, T. S., Coia, J. E., Østergaard, C., Westh, H. & Aarestrup, F. M., 10 Jun 2022, In: Frontiers in Microbiology. 13, 804627.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Antibiotic Sensitivity 100%
  • Antiinfective Agent 100%
  • Whole Genome Sequencing 88%
  • Antimicrobial Resistance 66%
  • Species 55%
  3 Citations (Scopus)

  20 Downloads (Pure)

• Sentinel surveillance and epidemiology of Clostridioides difficile in Denmark, 2016 to 2019

  Persson, S., Nielsen, H. L., Coia, J. E., Engberg, J., Olesen, B. S., Engsbro, A. L., Petersen, A. M., Holt, H. M., Lemming, L., Marmolin, E. S., Søndergaard, T. S., Andersen, L. P., Jensen, M. B. F., Wiuf, C., Sørensen, G., Nielsen, S. H. & Nielsen, E. M., 8 Dec 2022, In: Eurosurveillance (Online Edition). 27, 49, 9 p., 2200244.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Epidemiology 100%
  • Sentinel Surveillance 100%
  • Clostridium difficile 100%
  • Toxin 50%
  • Polymerase Chain Reaction 50%
  1 Citation (Scopus)

  18 Downloads (Pure)

• Targeted AntiBiotics for Chronic pulmonary diseases (TARGET ABC): can targeted antibiotic therapy improve the prognosis of Pseudomonas aeruginosa-infected patients with chronic pulmonary obstructive disease, non-cystic fibrosis bronchiectasis, and asthma? A multicenter, randomized, controlled, open-label trial

  Eklöf, J., Alispahic, I. A., Sivapalan, P., Wilcke, T., Seersholm, N., Armbruster, K., Kjærgaard, J. L., Saeed, M. I., Nielsen, T. L., Browatzki, A., Overgaard, R. H., Fenlev, C. S., Harboe, Z. B., Andreassen, H. F., Lapperre, T. S., Pedersen, L., Johnsen, S., Ulrik, C. S., Janner, J., Moberg, M., & 19 othersHeidemann, M., Weinreich, U. M., Vijdea, R., Linde, H., Titlestad, I., Johansson, S. L., Rosenvinge, F. S., Østergaard, C., Ghathian, K. S. A., Gundersen, L., Christensen, C. W., Bangsborg, J., Jensen, T. T., Sørensen, V. M., Ellingsgaard, T., Datcu, R., Coia, J. E., Bodtger, U. & Jensen, J. U. S., 27 Sept 2022, In: Trials. 23, 1, 817.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Antibiotics 100%
  • Chronic Obstructive Pulmonary Disease 100%
  • Antibiotic Therapy 100%
  • Pseudomonas aeruginosa 100%
  • Cystic Fibrosis 100%
  2 Citations (Scopus)

  8 Downloads (Pure)

• Ureaplasma parvum-artritis i knæ, hofte og sacroiliacaled

  Translated title of the contribution: Ureaplasma parvum arthritis affecting knee, hip, and sacroiliac jointHviid Christiansen, C., Doering, P., Samulioniené, J. & Nielsen, H. L., 4 Jul 2022, In: Ugeskrift for Læger. 184, V03220161.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Arthritis 100%
  • Sacroiliac Joint 100%
  • Knee 100%
  • Hip 100%
  • Combination Therapy 66%
• 2021

  A case of blaNDM-1-positive Salmonella Kottbus, Denmark, November 2020

  Nielsen, H. L., Thomsen, P. K., Litrup, E., Torpdahl, M., Overballe-Petersen, S., Hansen, F., Christensen, A. K. S. & Hasman, H., Jul 2021, In: Eurosurveillance (Online Edition). 26, 26, 2100569.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Salmonella 100%
  • Plasmid 100%
  • Escherichia coli 25%
  • Carbapenemase 25%
  • Species 25%
  2 Citations (Scopus)

  26 Downloads (Pure)

• Danish national guideline for the treatment of Clostridioides difficile infection and use of faecal microbiota transplantation (FMT)

  Baunwall, S. M. D., Dahlerup, J. F., Engberg, J. H., Erikstrup, C., Helms, M., Juel, M. A., Kjeldsen, J., Nielsen, H. L., Nilsson, A. C., Rode, A. A., Vinter-Jensen, L. & Hvas, C. L., Sept 2021, In: Scandinavian Journal of Gastroenterology. 56, 9, p. 1056-1077 22 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Infection 100%
  • Fecal Microbiota Transplantation 100%
  • Therapeutic Procedure 100%
  • Feces microflora 100%
  • Clostridium Difficile Infection 50%
  12 Citations (Scopus)

  26 Downloads (Pure)

• Danish Whole-Genome-Sequenced Candida albicans and Candida glabrata Samples Fit into Globally Prevalent Clades

  Szarvas, J., Rebelo, A. R., Bortolaia, V., Leekitcharoenphon, P., Schrøder Hansen, D., Nielsen, H. L., Nørskov-Lauritsen, N., Kemp, M., Røder, B. L., Frimodt-Møller, N., Søndergaard, T. S., Coia, J. E., Østergaard, C., Westh, H. & Aarestrup, F. M., 12 Nov 2021, In: Journal of fungi (Basel, Switzerland). 7, 11, 962.

  Research output: Contribution to journal › Letter › peer-review

  Open Access

  File

  • Cladistics 100%
  • Sequenced Genomes 100%
  • Candida Albicans 100%
  • Candida Glabrata 100%
  • Sample 100%
  1 Citation (Scopus)

  25 Downloads (Pure)

• From days to hours: Development and implementation of metagenomic DNA- sequencing in clinical microbiology diagnostics

  Nielsen, M. E., Søgaard, K. K., Nielsen, H. L. & Albertsen, M., 15 Nov 2021. 1 p.

  Research output: Contribution to conference without publisher/journal › Conference abstract for conference › Research

  File

  • Development 100%
  • DNA Sequencing 100%
  • Diagnostic Microbiology 100%
  • Patient 100%
  • Diagnosis 100%
  20 Downloads (Pure)

• Haemophilus influenzae one day in Denmark: prevalence, circulating clones, and dismal resistance to aminopenicillins

  Nørskov-Lauritsen, N., Pedersen, N., Lam, J. U. H., Nielsen, H. L., Kobel, C. M., Hansen, D. S. & ODiD Consortium, Oct 2021, In: European Journal of Clinical Microbiology & Infectious Diseases. 40, 10, p. 2077-2085 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Prevalence 100%
  • Clone 100%
  • Haemophilus influenzae 100%
  • Aminopenicillin 100%
  • Sample 60%
  2 Citations (Scopus)

• Helicobacter cinaedi bacteraemia secondary to enterocolitis in an immunocompetent patient

  Rasmussen, S. L., Ørsted, I., Tarpgaard, I. H. & Nielsen, H. L., 23 Apr 2021, In: Gut Pathogens. 13, 1, 5 p., 26.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Bacteremia 100%
  • Enterocolitis 100%
  • Helicobacter Cinaedi 100%
  • Infection 50%
  • Diarrhea 50%
  2 Citations (Scopus)

  22 Downloads (Pure)

• High genetic diversity in Campylobacter concisus isolates from patients with microscopic colitis

  Aagaard, M. E. Y., Kirk, K. F., Nielsen, H. & Nielsen, H. L., 12 Jan 2021, In: Gut Pathogens. 13, 1, 5 p., 3.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Campylobacter Concisus 100%
  • Genetic Variability 100%
  • Microscopic Colitis 100%
  • Genetic Divergence 100%
  • Inflammatory Bowel Disease 60%
  4 Citations (Scopus)

  16 Downloads (Pure)

• Severe deep neck space infection caused by Eggerthia catenaformis

  Krarup, J. F., Nielsen, H. L. & Danstrup, C. S., 2 Apr 2021, In: BMJ Case Reports. 14, 4, ee241384.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Infection 100%
  • Neck 100%
  • Surgery 50%
  • Antimicrobial Therapy 50%
  • Abscess 50%
  1 Citation (Scopus)

• Three cases of Sutterella wadsworthensis bacteremia secondary to abdominal infections

  Kirk, K. F., Andersen, K. L., Tarpgaard, I. H. & Nielsen, H. L., Dec 2021, In: Anaerobe. 72, 4 p., 102460.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Bacteremia 100%
  • Bacterium 100%
  • Abdominal Infection 100%
  • Patient 100%
  • Surgery 50%
  3 Citations (Scopus)

  122 Downloads (Pure)

• Whole genome sequencing data used for surveillance of Campylobacter infections: detection of a large continuous outbreak, Denmark, 2019

  Joensen, K. G., Schjørring, S., Gantzhorn, M. R., Vester, C. T., Nielsen, H. L., Engberg, J. H., Holt, H. M., Ethelberg, S., Müller, L., Sandø, G. & Nielsen, E. M., Jun 2021, In: Eurosurveillance (Online Edition). 26, 22, 8 p., 2001396.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Surveillance 100%
  • Epidemic 100%
  • Campylobacteriosis 100%
  • Whole Genome Sequencing 100%
  • Campylobacter 100%
  8 Citations (Scopus)

  15 Downloads (Pure)
• 2020

  Campylobacter concisus Impairs Sodium Absorption in Colonic Epithelium via ENaC Dysfunction and Claudin-8 Disruption

  Nattramilarasu, P. K., Bücker, R., Lobo de Sá, F. D., Fromm, A., Nagel, O., Lee, I-F. M., Butkevych, E., Mousavi, S., Genger, C., Kløve, S., Heimesaat, M. M., Bereswill, S., Schweiger, M. R., Nielsen, H. L., Troeger, H. & Schulzke, J-D., 7 Jan 2020, In: International Journal of Molecular Sciences . 21, 2, 373.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Epithelium 100%
  • Campylobacter Concisus 100%
  • Epithelial Sodium Channel 100%
  • Sodium Absorption 100%
  • Claudin 100%
  15 Citations (Scopus)

  34 Downloads (Pure)

• Campylobacter concisus is prevalent in the gastrointestinal tract of patients with microscopic colitis

  Yde Aagaard, M. E., Frahm Kirk, K., Linde Nielsen, H., Harder Tarpgaard, I., Bach Hansen, J. & Nielsen, H., Aug 2020, In: Scandinavian Journal of Gastroenterology. 55, 8, p. 924-930 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Campylobacter Concisus 100%
  • Microscopic Colitis 100%
  • Patient 100%
  • Gastrointestinal Tract 100%
  • Biopsy 100%
  9 Citations (Scopus)

• Case report: A fatal case of aortic and mitral valve endocarditis caused by Streptobacillus moniliformis

  Winther, M., Jensen, H. S., Harder Tarpgaard, I. & Nielsen, H. L., Oct 2020, In: European Heart Journal - Case Reports. 4, 5, p. 1-6 6 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File
  3 Citations (Scopus)

  23 Downloads (Pure)

• Clinical results and microbiota changes after faecal microbiota transplantation for chronic pouchitis: a pilot study

  Kousgaard, S. J., Michaelsen, T. Y., Nielsen, H. L., Kirk, K. F., Brandt, J., Albertsen, M. & Thorlacius-Ussing, O., Apr 2020, In: Scandinavian Journal of Gastroenterology. 55, 4, p. 421-429 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Fecal Microbiota Transplantation 100%
  • Pouchitis 100%
  • Patient 60%
  • Follow up 50%
  • Donor 50%
  13 Citations (Scopus)

• Consumption of yoghurt favours remission after faecal microbiota transplantation for chronic pouchitis

  Kousgaard, S. J., Nielsen, H. L., Kirk, K. F. & Thorlacius-Ussing, O., Oct 2020, In: International Journal of Colorectal Disease. 35, 10, p. 1955-1958 4 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Spontaneous Remission 100%
  • Fecal Microbiota Transplantation 100%
  • Pouchitis 100%
  • Patient 100%
  • Diet 44%
  3 Citations (Scopus)

• Faecal microbiota transplantation to chronic pouchitis improves quality of life: a pilot study

  Kousgaard, S. J., Nielsen, H. L., Kirk, K. F. & Thorlacius-Ussing, O., Nov 2020, In: International Journal of Colorectal Disease. 35, 11, p. 2135-2136 2 p.

  Research output: Contribution to journal › Comment/debate › Research › peer-review
  2 Citations (Scopus)

• Fecal microbiota transplantation in the treatment of chronic pouchitis: A systematic review

  Cold, F., Kousgaard, S. J., Halkjaer, S. I., Petersen, A. M., Nielsen, H. L., Thorlacius-Ussing, O. & Hansen, L. H., 18 Sept 2020, In: Microorganisms. 8, 9, p. 1-17 17 p., 1433.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  File

  • Fecal Microbiota Transplantation 100%
  • Pouchitis 100%
  • Therapeutic Procedure 100%
  • Systematic Review 100%
  • Feces microflora 100%
  10 Citations (Scopus)

  28 Downloads (Pure)

• First Danish case of infective endocarditis caused by Enterococcus hirae

  Winther, M., Dalager-Pedersen, M., Tarpgaard, I. H. & Nielsen, H. L., 22 Dec 2020, In: BMJ Case Reports. 13, 12, e237950.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Infective Endocarditis 100%
  • Endocarditis 100%
  • Aortic Valve 60%
  • Heart Disease 40%
  • Heart 40%
  4 Citations (Scopus)

• High risk of microscopic colitis after Campylobacter concisus infection: population-based cohort study

  Nielsen, H. L., Dalager-Pedersen, M. & Nielsen, H., Nov 2020, In: Gut. 69, 11, p. 1952-1958 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Infection 100%
  • Cohort Analysis 100%
  • Campylobacter Concisus 100%
  • Microscopic Colitis 100%
  • Cohort Study 100%
  17 Citations (Scopus)

• The Microbiota Profile in Inflamed and Non-Inflamed Ileal Pouch-Anal Anastomosis

  Kousgaard, S. J., Michaelsen, T. Y., Nielsen, H. L., Kirk, K. F., Albertsen, M. & Thorlacius-Ussing, O., 20 Oct 2020, In: Microorganisms. 8, 10, p. 1-10 10 p., 1611.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Ileo-Anal Pouch 100%
  • Patient 100%
  • Pouchitis 45%
  • Familial Adenomatous Polyposis 27%
  • Microbial Diversity 18%
  2 Citations (Scopus)

  34 Downloads (Pure)

• Whole-Genome Sequencing to Detect Numerous Campylobacter jejuni Outbreaks and Match Patient Isolates to Sources, Denmark, 2015-2017

  Joensen, K. G., Kiil, K., Gantzhorn, M. R., Nauerby, B., Engberg, J., Holt, H. M., Nielsen, H. L., Petersen, A. M., Kuhn, K. G., Sandø, G., Ethelberg, S. & Nielsen, E. M., Mar 2020, In: Emerging Infectious Diseases . 26, 3, p. 523-532 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Campylobacter Jejuni 100%
  • Whole Genome Sequencing 100%
  • Campylobacter 100%
  • Electric Potential 66%
  • Chicken 66%
  20 Citations (Scopus)

  29 Downloads (Pure)
• 2019

  Campylobacter concisus and cytokine production in intestinal cell lines

  Aagaard, M. E. Y., Steffensen, R., Kirk, K. F., Nielsen, H. L., Hansen, J. B. & Nielsen, H., 2019.

  Research output: Contribution to conference without publisher/journal › Conference abstract for conference › Research › peer-review

• Comparative genomics and genome biology of Campylobacter showae

  Hsu, T., Gemmell, M. R., Franzosa, E. A., Berry, S., Mukhopadhya, I., Hansen, R., Michaud, M., Nielsen, H., Miller, W. G., Nielsen, H., Bajaj-Elliott, M., Huttenhower, C., Garrett, W. S. & Hold, G. L., Jun 2019, In: Emerging microbes & infections. 8, 1, p. 827-840 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Gene 100%
  • Campylobacter 100%
  • Secretion (Process) 40%
  • Electric Potential 40%
  • Bacterium 20%
  6 Citations (Scopus)

  134 Downloads (Pure)

• Motility and biofilm formation of the emerging gastrointestinal pathogen Campylobacter concisus differs under microaerophilic and anaerobic environments

  Ovesen, S., Durack, J., Kirk, K. F., Nielsen, H. L., Nielsen, H. & Lynch, S. V., 2 Jan 2019, In: Gut Microbes. 10, 1, p. 34–44 11 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Biofilm 100%
  • Campylobacter Concisus 100%
  • Infectious Agent 100%
  • Normal Human 28%
  • Inflammatory Bowel Disease 28%
  6 Citations (Scopus)

• One day in Denmark to evaluate the applicability of whole-genome sequencing in clinical microbiology diagnostics

  Rebelo, A. R., Aarestrup, F. M., Bortolaia, V., Leekitcharoenphon, P., Hansen, D. S., Westh, H., Nørskov-Lauritsen, N., Nielsen, H. L., Kemp, M., Røder, B. L., Frimodt-Møller, N., Dzajic, E., Søndergaard, T. S. & Østergaard, C., 2019.

  Research output: Contribution to conference without publisher/journal › Conference abstract for conference › Research › peer-review

• Risk of inflammatory bowel disease after Campylobacter jejuni and Campylobacter concisus infection: a population-based cohort study

  Nielsen, H. L., Dalager-Pedersen, M. & Nielsen, H., 24 Mar 2019, In: Scandinavian Journal of Gastroenterology. 54, 3, p. 265-272 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Infection 100%
  • Cohort Analysis 100%
  • Campylobacter Concisus 100%
  • Campylobacter Jejuni 100%
  • Inflammatory Bowel Disease 100%
  13 Citations (Scopus)
• 2018

  Comparative genomics of Campylobacter concisus: Analysis of clinical strains reveals genome diversity and pathogenic potential

  Gemmell, M. R., Berry, S., Mukhopadhya, I., Hansen, R., Nielsen, H. L., Bajaj-Elliott, M., Nielsen, H. & Hold, G. L., 2018, In: Emerging microbes & infections. 7, 1, 17 p., 116.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Campylobacter Concisus 100%
  • Campylobacter 100%
  • Comparative Genomics 100%
  • Analysis 100%
  • Patient 100%
  22 Citations (Scopus)

  517 Downloads (Pure)

• Molecular epidemiology and comparative genomics of Campylobacter concisus strains from saliva, faeces and gut mucosal biopsies in inflammatory bowel disease

  Kirk, K. F., Méric, G., Nielsen, H. L., Pascoe, B., Sheppard, S. K., Thorlacius-Ussing, O. & Nielsen, H., 1 Dec 2018, In: Scientific Reports. 8, 1, 8 p., 1902.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Feces 100%
  • Phenotype 100%
  • Saliva 100%
  • Inflammatory Bowel Disease 100%
  • Campylobacter Concisus 100%
  31 Citations (Scopus)

  148 Downloads (Pure)

• Novel Campylobacter concisus lipooligosaccharide is a determinant of inflammatory potential and virulence

  Brunner, K., John, C. M., Phillips, N. J., Alber, D. G., Gemmell, M. R., Hansen, R., Nielsen, H. L., Hold, G. L., Bajaj-Elliott, M. & Jarvis, G. A., Oct 2018, In: Journal of Lipid Research. 59, 10, p. 1893-1905 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Electric Potential 100%
  • Campylobacter Concisus 100%
  • Virulence 100%
  • Lipooligosaccharide 100%
  • Campylobacter 100%
  2 Citations (Scopus)

• Rare Elizabethkingia anophelis meningitis case in a Danish male

  Nielsen, H. L., Tarpgaard, I. H., Fuglsang-Damgaard, D., Thomsen, P. K., Brisse, S. & Dalager-Pedersen, M., Aug 2018, In: JMM Case Reports. 5, 8, p. 1-5 5 p., e005163.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Meningitis 100%
  • Elizabethkingia 100%
  • Species 100%
  • Male 100%
  • Matrix Assisted Laser Desorption Ionization Time of Flight Mass Spectrometry 40%
  196 Downloads (Pure)

• Session 2: Mutational discordance: the big challenge in personalized treatments – any solutions?

  Kousgaard, S. J., Kirk, K. F., Nielsen, H. L. & Thorlacius-Ussing, O., 1 May 2018, In: Colorectal Disease. 20, S4, p. 49-51 3 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  File

  • Neoplasm 100%
  • Patient 100%
  • Therapeutic Procedure 100%
  • Solution and Solubility 100%
  • Biggest Challenge 100%
  44 Downloads (Pure)

• Whole-genome sequencing of Campylobacter jejuni isolated from Danish routine human stool samples reveals surprising degree of clustering

  Joensen, K. G., Kuhn, K. G., Müller, L., Björkman, J. T., Torpdahl, M., Engberg, J., Holt, H. M., Nielsen, H. L., Petersen, A. M., Ethelberg, S. & Nielsen, E. M., 2018, In: Clinical Microbiology and Infection. 24, 2, p. 201.e5-201.e8 4 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Campylobacter Jejuni 100%
  • Whole Genome Sequencing 100%
  • Epidemic 75%
  • Campylobacter 50%
  • Patient 50%
  20 Citations (Scopus)