Research output per year
Research output per year
Personal profile
Research profile
Prof. Dr. Uchida’s lab is interested in elucidating the functions of non-coding RNAs (ncRNAs) and epitranscriptomics enzymes using dry (bioinformatics) and wet (biology) lab techniques. He and his team have built a number of bioinformatics tools to help analyze high-throughput data (e.g., microarrays, RNA-seq). Prof. Dr. Uchida utilizes knockout and transgenic mice to understand the effects of ncRNAs and epitranscriptomics to cardiovascular system and development.
Research profile
Currently, I am serving as Guest Editors for the following special issues/collection:
[1] Non-Coding RNA: "Methods and Tools in RNA biology" (Deadline: May 20, 2023)
[2] Biomolecules: "Biomolecular approaches to regulate RNA expression and functions" (Deadline: May 31, 2023)
[3] Biomolecules: "Advances in RNA as Diagnostic Biomarkers" (Deadline: May 31, 2023)
[4] Frontiers in Cardiovascular Medicine: "Rising Stars in Atherosclerosis and Vascular Medicine: 2023" (Deadline: August 12, 2023)
[5] BioTech: "Computational Methods for the Analysis of RNA Structures and Modifications" (Deadline: October 1, 2023)
[6] Clinical and Translational Discovery: "RNA Medicine" (Deadline: December 31, 2023)
[7] Non-Coding RNA: "Computational Approaches for Pinpointing the Locations and Properties of Non-coding RNAs" (Deadline: December 31, 2023)
Education/Academic qualification
Molecular Biology, Ph.D., Japan Advanced Institute of Science and Technology
Apr 2004 → Mar 2007
Award Date: 22 Mar 2007
Bioinformatics, M.S., Japan Advanced Institute of Science and Technology
Apr 2002 → Sept 2003
Award Date: 26 Sept 2003
Biology & Ancient Greek, B.S., Creighton University
Aug 1994 → May 1998
Award Date: 16 May 1998
External positions
Advisory Board Member of Heliyon Genetics, Cell Press
Mar 2023 → Feb 2024
Editorial board member of American Journal of Physiology – Heart and Circulatory Physiology
Jan 2023 → …
Member, COST Action CA21113 - Genome Editing to Treat Humans Diseases (GenE-Humdi)
Jan 2023 → …
Associate Editor of Physiological Reports
Jan 2023 → …
Editorial board member of Global Translational Medicine
Dec 2022 → …
Member, COST Action CA21169 - Information, Coding, and Biological Function: the Dynamics of Life (DYNALIFE)
Nov 2022 → …
Member, COST Action CA21153 - Network for implementing multiomics approaches in atherosclerotic cardiovascular disease prevention and research (AtheroNET)
Nov 2022 → …
Editorial board member for Biochemical Genetics, Springer Science+Business Media, LLC, part of Springer Nature
Oct 2022 → …
Editorial board member of the Physiological Genomics
Jul 2022 → …
Editorial board member for Biomolecules
Jun 2022 → May 2024
Associate Editor for Editorial Board of Integrative Bioinformatics, Frontiers in Bioinformatics, Frontiers Media SA
Jun 2022 → …
Associate Editor for Physiological Reports
Jan 2022 → Dec 2025
Section Editor in “Transcriptomics” for Current Bioinformatics
Dec 2021 → …
Editorial board member for Molecular Medicine Reports, Spandidos Publications
Dec 2021 → …
Editorial board member for Frontiers in Bioscience-Elite
Oct 2021 → …
Partner, EPITRAN COST Action CA16120 – European Epitranscriptomics Network
14 Sept 2021 → …
Editorial board member for ExRNA
Sept 2021 → Aug 2023
Review Editor for Environmental, Aviation and Space Physiology, Frontiers in Physiology
Sept 2021 → …
Editorial board member for Pharmacogenomics Research and Personalized Medicine
Aug 2021 → Jul 2023
Review Editor for Pharmacology of Anti-Cancer Drugs, Frontiers in Pharmacology and Frontiers in Oncology
25 Nov 2020 → …
Editorial board member for Journal of Molecular and Clinical Medicine
Nov 2020 → Oct 2022
Member, CardioRNA COST Action CA17129 – Catalysing transcriptomics research in cardiovascular disease
Nov 2020 → …
Associate Editor for Editorial Board of Atherosclerosis and Vascular Medicine, Frontiers in Cardiovascular Medicine, Frontiers Media SA
Jan 2020 → …
Editorial board member for Annals of Translational Medicine, AME Publishing Company
Nov 2019 → Oct 2021
Fellow of the American Heart Association (FAHA), American Heart Association
Sept 2019 → …
Editorial board member for Non-Coding RNA, MDPI AG
Jul 2019 → …
Editorial board member for Computation, MDPI AG
Jul 2019 → …
Editorial board member for High-Throughput, MDPI AG
Mar 2019 → …
Review Editor for Cardiovascular and Smooth Muscle Pharmacology, Frontiers in Pharmacology, Frontiers Media SA
Jan 2019 → …
Editorial board member for American Journal of Physiology – Cell Physiology, American Physiological Society
Jul 2018 → …
Editorial board member for Circulation Research, American Heart Association
Jun 2018 → Jun 2020
Editorial board member for OA Journal - Antibodies, EnPress Publisher LLC
Jun 2018 → …
Editorial board member for Journal of Human and Clinical Genetics, SciAccess Publishers
Jun 2018 → …
Review Editor for Cardiovascular Metabolism, Frontiers in Cardiovascular Medicine, Frontiers Media SA
Mar 2017 → …
Keywords
- Biomedicine
- RNA Therapeutics
- Medicine
- Cardiovascular
- Computer Science
- Bioinformatics
- Database
- Web Interface
- Chemistry and Bioscience
- RNA Biology
- Non-Coding RNAs
- Epitranscriptomics
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Collaborations and top research areas from the last five years
Dive into details by clicking on the dots.
Research output
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FibroDB: Expression Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibrosis
Ilieva, M. S., Miller, H. E., Agarwal, A., Paulus, G. K., Madsen, J. H., Bishop, A. J. R., Kauppinen, S. & Uchida, S., 28 Jan 2022, In: Non-coding RNA. 8, 1, 13.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile9 Citations (Scopus)36 Downloads (Pure) -
The A-to-I RNA Editing Enzyme Adar1 Is Essential for Normal Embryonic Cardiac Growth and Development
Moore, J. B., Sadri, G., Fischer, A. G., Weirick, T., Militello, G., Wysoczynski, M., Gumpert, A. M., Braun, T. & Uchida, S., 31 Jul 2020, In: Circulation Research. 127, 4, p. 550-552 3 p.Research output: Contribution to journal › Letter › peer-review
16 Citations (Scopus) -
Adenosine-to-inosine RNA editing controls cathepsin S expression in atherosclerosis by enabling HuR-mediated post-transcriptional regulation
Stellos, K., Gatsiou, A., Stamatelopoulos, K., Perisic Matic, L., John, D., Lunella, F. F., Jaé, N., Rossbach, O., Amrhein, C., Sigala, F., Boon, R. A., Fürtig, B., Manavski, Y., You, X., Uchida, S., Keller, T., Boeckel, J. N., Franco-Cereceda, A., Maegdefessel, L., Chen, W., & 6 others, 1 Oct 2016, In: Nature Medicine. 22, 10, p. 1140-1150 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
184 Citations (Scopus) -
Investigation of RNA editing sites within bound regions of RNA-binding proteins
Weirick, T., Militello, G., Hosen, M. R., John, D., Moore, J. B. & Uchida, S., Dec 2019, In: High-Throughput. 8, 4, 19.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access2 Citations (Scopus) -
American Journal of Physiology-Cell Physiology in 2022: at a glance
Delpire, E., Hawke, T. J., Karthikeyan, M., Kong, W., Nyström, A., Uchida, S. & Schaefer, L., 1 Feb 2023, In: American Journal of Physiology: Cell Physiology. 324, 2, p. C553–C557 5 p.Research output: Contribution to journal › Editorial › peer-review
Datasets
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Differentially regulated genes in the heart of benzene exposed TAC-instrumented mice
Zelko, I. N. (Creator), Dassanayaka, S. (Creator), Malovichko, M. V. (Creator), Howard, C. M. (Creator), Garrett, L. F. (Creator), Uchida, S. (Creator), Brittian, K. R. (Creator), Jones, S. P. (Creator) & Srivastava, S. (Creator), Dryad, 31 Oct 2021
DOI: 10.5061/dryad.12jm63xz6, http://datadryad.org/stash/dataset/doi:10.5061/dryad.12jm63xz6
Dataset