Shizuka Uchida

Research output

Research output per year 2005 2015 2016 2018 2019 2020 2022 2023

• 65 Journal article
• 36 Conference abstract in journal
• 19 Review article
• 8 Editorial
• 11 More
  • 4 Comment/debate
  • 2 Letter
  • 1 Book
  • 1 Book chapter
  • 1 Conference abstract for conference
  • 1 Paper without publisher/journal
  • 1 Other contribution

Research output per year

Research output per year

Search results

• 2015

  JARID1B represses HOXA5 and thereby maintains angiogenesis: P056

  Fork, C., Gu, L., Leisegang, M. S., Ponomareva, Y., Uchida, S., Brandes, R. P. & Hu, J., 5 Mar 2015, In: Acta Physiologica. 213, S699, p. 89-90 2 p., P056.

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

• Long Non-coding RNA Meg3 Controls Endothelial Cell Function: Implications for Endothelial Aging and Senescence

  Boon, R. A., Hofmann, P., Michalik, K. M., Knau, A., Ponomareva, Y., Zeiher, A., Uchida, S. & Dimmeler, S., 6 Nov 2015, In: Circulation. 132, Suppl. 3, 16761.

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

• Long noncoding RNAs in cardiovascular diseases

  Uchida, S. & Dimmeler, S., 13 Feb 2015, In: Circulation Research. 116, 4, p. 737-750 14 p.

  Research output: Contribution to journal › Review article › peer-review

  • Long Untranslated RNA 100%
  • Long Noncoding RNA 81%
  • Cardiovascular Disease 27%
  • Smooth Muscle Cell 18%
  • Smooth Muscle 18%
  535 Citations (Scopus)

• RNA Editing Controls Gene Expression in Atherosclerotic Heart Disease by Enabling HuR-mediated Posttranscriptional Regulation

  Konstantinos, S., Aikaterini, G., Reinier, B., David, J., Boris, F., F, L. F., Carolin, A., Yosif, M., Xintian, Y., Shizuka, U., Till, K., Jes-Niels, B., Wei, C., Harald, S., M, Z. A. & Stefanie, D., 2015, In: Circulation. 132, Suppl_3, p. A16994-A16994

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

• RNA editing is essential for vascular homeostasis in vivo and controls gene expression in patients with cardiovascular disease

  Stellos, K., Gatsiou, K., Boon, R. A., John, D., Uchida, S., Keller, T., Chen, W., Schwalbe, H., Zeiher, A. & Dimmeler, S., 2015, In: European Heart Journal. 36, Abstract Supplement, p. 377-377

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

• The Pro-angiogenic Long Non-coding Rna Tykril Controls Human Pericyte Function Through Regulation Of P53 Activity and Pdgfrß Expression

  M, Z. C., Astrid, W., Florian, B., Jes-Niels, B., Shemsi, D., Katharina, M., Benjamin, M., A, K. H., Jan, H., Wei, C., David, J., Shizuka, U., M, Z. A. & Stefanie, D., 2015, In: Circulation. 132, Suppl_3, p. A17867-A17867

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
• 2014

  Endothelial ADAR1-Mediated RNA Editing Controls Cathepsin S mRNA Stability and Angiogenesis

  Konstantinos, S., Aikaterini, G., A, B. R., David, J., Boris, F., Yosif, M., Anuradha, D., F, L. F., Carolin, A., Xintian, Y., Shizuka, U., Jes-Niels, B., Wei, C., Harald, S., Andreas, Z. & Stefanie, D., 2014, In: Circulation. 130, Suppl_2, p. A15691-A15691

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

• Hypoxia Induces Phenotypic Switching of Human Pericytes Into Smooth Muscle Cells That is Associated With Changes in Pericyte-specific Non-coding RNA Expression

  Zehendner, C. M., Demolli, S., Michalik, K. M., Jaé, N., Wagner, J., John, D., Uchida, S., Zeiher, A. & Dimmeler, S., 25 Nov 2014, In: Circulation. 130, suppl_2

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  • Pericyte 100%
  • Humans 80%
  • Hypoxemia 32%
  • Hypoxia 32%
  • Untranslated RNA 28%

• Jarid1b maintains endothelium-dependent relaxation and is essential for angiogenesis

  Fork, C., Gu, L., Uchida, S., Ponomareva, Y. & Brandes, R. P., Apr 2014, In: Clinical Research in Cardiology. 103, Suppl 1

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  • Western Blot 100%
  • Methylation 80%
  • Endothelium 60%
  • Relaxation 60%
  • Polymerase Chain Reaction 60%

• Jarid1b maintains endothelium-dependent relaxation and is essential for angiogenesis

  Fork, C., Gu, L., Uchida, S., Ponomareva, Y. & Brandes, R. P., 6 Mar 2014, In: Acta Physiologica. 210, p. 121-122 2 p.

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

• Long Noncoding RNA MALAT1 Regulates Endothelial Cell Function and Vessel Growth

  Michalik, K. M., You, X., Manavski, Y., Doddaballapur, A., Zörnig, M., Braun, T., John, D., Ponomareva, Y., Chen, W., Uchida, S., Boon, R. A. & Dimmeler, S., 25 Apr 2014, In: Circulation Research. 114, 9, p. 1389–1397 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Metastatic Carcinoma 100%
  • Lung Adenocarcinoma 100%
  • Lung 100%
  • Metastasis 100%
  • Endothelial Cell 70%
  722 Citations (Scopus)

• Long Non-coding RNA Meg3 Regulates Senescence-associated Genes and Controls Endothelial Cell Function

  Boon, R. A., Hofmann, P., Michalik, K. M., Knau, A., Ponomareva, Y., Zeiher, A., Uchida, S. & Dimmeler, S., 25 Nov 2014, In: Circulation. 130, suppl_2

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  • Endothelial Cell 100%
  • RNA 80%
  • Cells 80%
  • In Vitro 60%
  • Gene Expression 60%

• Malat1 Regulates the Inflammatory Response of Endothelial Cells

  Michalik, K. M., John, D., Chen, W., Uchida, S., Schober, A., Weber, C., Boon, R. A. & Dimmeler, S., 25 Nov 2014, In: Circulation. 130, suppl_2

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  • Endothelial Cell 100%
  • Tumor Necrosis Factor 85%
  • Inflammatory 85%
  • Serositis 57%
  • Inflammation 57%

• The Long non-coding RNA n342419 (Mantis) is an important component for the homeostasis of the vascular system

  Leisegang, M. S., Fork, C., Ponomareva, Y., Uchida, S. & Brandes, R. P., 14 Mar 2014, In: Acta Psychologica. 210, s695, p. 98-99 2 p.

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
• 2013

  A-to-I RNA Editing Regulates Gene Expression and Controls Angiogenesis in Human Endothelial Cells

  Stellos, K., Amrhein, C., Boeckel, J. N., Gatsiou, K., Michalik, K. M., Kaluza, D., Wagner, J., John, D., You, X., Uchida, S., Chen, W., Boon, R. A., Zeiher, A. & Dimmeler, S., 26 Nov 2013, In: Circulation. 128, suppl_22

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  • RNA Editing 100%
  • Cathepsin S 88%
  • Endothelial Cells 77%
  • RNA 66%
  • Endothelial Cell 66%

• Identification of Laminar Flow Regulated Non-Coding RNAs in Endothelial Cells

  Michalik, K. M., You, X., Doddaballapur, A., Jaé, N., John, D., Chen, W., Uchida, S., Boon, R. A. & Dimmeler, S., 2013, In: Circulation. 128, suppl_22

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  • Laminar Flow 100%
  • Cells 100%
  • Endothelial Cell 83%
  • Anti-Inflammatory Drug 66%
  • Next Generation Sequencing 50%

• Noncoder: A web interface for exon array-based detection of long non-coding RNAs

  Gellert, P., Ponomareva, Y., Braun, T. & Uchida, S., Jan 2013, In: Nucleic Acids Research. 41, 1, p. e20

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Long Untranslated RNA 100%
  • Long Non-Coding RNA 100%
  • Exon 62%
  • Probe 37%
  • Spider Web 37%
  42 Citations (Scopus)

• Regulation of miR-17-92a cluster processing by the microRNA binding protein SND1

  Heinrich, E. M., Wagner, J., Krüger, M., John, D., Uchida, S., Weigand, J. E., Suess, B. & Dimmeler, S., 2 Aug 2013, In: FEBS Letters. 587, 15, p. 2405-2411 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • SND1 100%
  • Processing 75%
  • microRNA 75%
  • MicroRNA 50%
  • Posttranscriptional Regulation 50%
  21 Citations (Scopus)

• Sca1-derived cells are a source of myocardial renewal in the murine adult heart

  Uchida, S., De Gaspari, P., Kostin, S., Jenniches, K., Kilic, A., Izumiya, Y., Shiojima, I., Grosse Kreymborg, K., Renz, H., Walsh, K. & Braun, T., 19 Nov 2013, In: Stem Cell Reports. 1, 5, p. 397-410 14 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Cells 100%
  • Cardiomyocyte 42%
  • Heart 42%
  • Cardiac Muscle Cell 42%
  • Aging 28%
  123 Citations (Scopus)

• Transcriptome Sequencing in Hypoplastic Left Heart Syndrome Myocardium Reveals Dysregulated Cell Cycle Genes

  Arndt, A-K., Musso, G., Gellert, P., Hoff, K., Toka, O., Uchida, S., Siebert, R., MacRae, C., Klaassen, S. & Kramer, H-H., 2013, In: The Thoracic and Cardiovascular Surgeon. 61, S 02

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  • Heart 100%
  • Cardiovascular System 100%
  • Hypoplastic Left Heart Syndrome 77%
  • RNA Sequencing 66%
  • Gene 44%
• 2012

  Annotating New Genes: From in Silico Screening to Experimental Validation

  Uchida, S., Aug 2012, Elsevier. 178 p.

  Research output: Book/Report › Book › Research › peer-review

  • Genes 100%
  • Screening 100%
  • Gene 100%
  • Validation 75%
  • Databases 50%

• Deeply Dissecting Stemness: Making Sense to Non-Coding RNAs in Stem Cells

  Uchida, S., Gellert, P. & Braun, T., Mar 2012, In: Stem Cell Reviews and Reports. 8, 1, p. 78-86 9 p.

  Research output: Contribution to journal › Review article › peer-review

  • Stem Cell 100%
  • Regeneration 60%
  • Progenitor Cell 60%
  • Messenger RNA 40%
  • Untranslated RNA 40%
  11 Citations (Scopus)

• De-regulated expression of microRNAs contributes to augmented T helper (TH) cell activity in experimental asthma

  Kılıç, A., Schiller, M., Uchida, S., Teranishi, M., Gellert, P., Braun, T. & Renz, H., 2012, In: Pneumologie. 66, 06

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  • microRNA 100%
  • T-Helper Cell 100%
  • MicroRNA 100%
  • T Helper Cell 100%
  • Fluorescence Activated Cell Sorting 75%

• Gene Array Analyzer: Alternative usage of gene arrays to study alternative splicing events

  Gellert, P., Teranishi, M., Jenniches, K., De Gaspari, P., John, D., Grosse Kreymborg, K., Braun, T. & Uchida, S., Mar 2012, In: Nucleic Acids Research. 40, 6, p. 2414-2425 12 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Events 100%
  • Gene 80%
  • DNA Microarray 80%
  • Exon 60%
  • Alternative Splicing 60%
  13 Citations (Scopus)
• 2011

  Are We There Yet? A Story About Cardiac Stem Cells

  Uchida, S., De Gaspari, P. & Braun, T., 23 Aug 2011, Stem Cells in Clinic and Research. Gholamrezanezhad, A. (ed.). InTech Open Access Publisher

  Research output: Contribution to book/anthology/report/conference proceeding › Book chapter › Research › peer-review

  Open Access

• C-It: A knowledge database for tissue-enriched genes

  Gellert, P., Jenniches, K., Braun, T., Uchida, S. & Wren, J., 2011. 6 p.

  Research output: Contribution to conference without publisher/journal › Paper without publisher/journal › Research › peer-review

  • Nested Gene 100%
  • Gene 100%
  • Tissues 57%
  • Knowledge Base 28%
  • Species 28%
  1 Citation (Scopus)

• Mesenchymal Stem Cells Modulate Inflammatory Responses in Murine Heart by Inhibition of the TNF System

  Martire, A., Bedada, F. B., Uchida, S., Poeling, J., Wietelmann, A., Krueger, M., Kubin, T., Szibor, M., Warnecke, H. & Braun, T., 22 Nov 2011, In: Circulation. 124, suppl_21

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  • Bone Marrow 100%
  • Tumor Necrosis Factor 66%
  • Mesenchymal Stem Cell 61%
  • Tumor Necrosis Factor Receptor 22%
  • Western Blot 22%
• 2010

  C-It: A knowledge database for tissue-enriched genes

  Gellert, P., Jenniches, K., Braun, T. & Uchida, S., 13 Jul 2010, In: Bioinformatics. 26, 18, p. 2328-2333 6 p., btq417.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Nested Gene 100%
  • Gene 100%
  • Tissues 57%
  • Knowledge Base 28%
  • Species 28%
  14 Citations (Scopus)

• Identification Of Putative Regulators Of Alveolarization

  Wolff, J. C., Fuchs, D., Fink, L., Wilhelm, J., Uchida, S., Schneider, A., Braun, T., Seeger, W. & Voswinckel, R., May 2010, In: American Journal of Respiratory and Critical Care Medicine. 181

  Research output: Contribution to journal › Conference abstract in journal › Research

• Identification of right heart-enriched genes in a murine model of chronic outflow tract obstruction

  Kreymborg, K. G., Uchida, S., Gellert, P., Schneider, A., Boettger, T., Voswinckel, R., Wietelmann, A., Szibor, M., Weissmann, N., Ghofrani, A. H., Schermuly, R., Schranz, D., Seeger, W. & Braun, T., Oct 2010, In: Journal of Molecular and Cellular Cardiology. 49, 4, p. 598-605 8 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Right Ventricle 100%
  • Left Ventricle 62%
  • Hypertrophy 37%
  • Pulmonary Artery 25%
  • Gene 25%
  46 Citations (Scopus)
• 2009

  An integrated approach for the systematic identification and characterization of heart-enriched genes with unknown functions

  Uchida, S., Schneider, A., Wiesnet, M., Jungblut, B., Zarjitskaya, P., Jenniches, K., Kreymborg, K. G., Seeger, W. & Braun, T., 6 Mar 2009, In: BMC Genomics. 10, 100.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Genes 100%
  • Nested Gene 100%
  • Databases 50%
  • Data Base 50%
  • Heart 25%
  13 Citations (Scopus)

• Exon array analyzer: A web interface for Affymetrix exon array analysis

  Gellert, P., Uchida, S. & Braun, T., 12 Oct 2009, In: Bioinformatics. 25, 24, p. 3323-3324 2 p., btp577.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Exon 100%
  • Analyzer 44%
  • Probe 33%
  • Heart 22%
  • Tissues 22%
  19 Citations (Scopus)

• Suche nach weitgehend unbekannten, an der Alveolarisierung beteiligten Genen

  Wolff, J. C., Wilhelm, J., Fuchs, D., Uchida, S., Schneider, A., Braun, T., Seeger, W. & Voswinckel, R., 2009, In: Pneumologie. 63, 02

  Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

• Systematically Screening for Tissue-Specific Alternative Splicing: heart as an example

  Gellert, P., Uchida, S. & Braun, T., 12 May 2009.

  Research output: Contribution to conference without publisher/journal › Conference abstract for conference › Research › peer-review
• 2008

  Efficient Homing of Multipotent Adult Mesenchymal Stem Cells Depends on FROUNT-Mediated Clustering of CCR2

  Belema-Bedada, F., Uchida, S., Martire, A., Kostin, S. & Braun, T., 5 Jun 2008, In: Cell Stem Cell. 2, 6, p. 566-575 10 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Bone Marrow 100%
  • CCR2 83%
  • Organ 50%
  • Stem Cell 33%
  • Heart 33%
  231 Citations (Scopus)
• 2007

  Upregulations of Gata4 and oxytocin receptor are important in cardiomyocyte differentiation processes of P19CL6 cells

  Uchida, S., Fuke, S. & Tsukahara, T., 15 Feb 2007, In: Journal of Cellular Biochemistry. 100, 3, p. 629-641 13 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  • Oxytocin Receptor 100%
  • Cardiomyocyte 80%
  • Oxytocin 80%
  • Cardiac Muscle Cell 80%
  • Upregulation 60%
  15 Citations (Scopus)
• 2005

  Detection and normalization of biases present in spotted cDNA microarray data: A composite method addressing dye, intensity-dependent, spatially-dependent, and print-order biases

  Uchida, S., Nishida, Y., Satou, K., Muta, S., Tashiro, K. & Kuhara, S., 2005, In: DNA Research. 12, 1, p. 1-7 7 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • Biases 100%
  • Microarrays 40%
  • Procedures 30%
  • cDNA Microarray 20%
  • Normalization Method 20%
  8 Citations (Scopus)

• Prediction of tertiary structure of NSSRs' RNA recognition motif and the RNA binding activity

  Fushimi, K., Uchida, S., Matsushita, R. & Tsukahara, T., Jul 2005, In: Science and Technology of Advanced Materials. 6, 5, p. 475-483 9 p.

  Research output: Contribution to journal › Journal article › Research › peer-review

  Open Access

  • RNA 100%
  • Protein 60%
  • Precursor mRNA 40%
  • Messenger RNA 30%
  • Serine Arginine Rich Protein 30%
  2 Citations (Scopus)

• Transcriptional study of cardiac differentiation mechanism of DMSO

  Uchida, S., Tatsuhama & Tsukahara, T., 14 Jun 2005, In: Cell Structure and Function. 30, p. 2P-56

  Research output: Contribution to journal › Journal article › Research › peer-review