Activities per year
Project Details
Key findings
Contributed to the construction of the community-scale MassIVE Knowledge Base (MassIVE-KB) spectral library with 513,085 spectra of 65,886 variants mapped to 5,670 proteins, including evidence for 11 novel proteins (see UniProt definition) which to date have not been reported as translated gene products.
| Acronym | MassIVE |
|---|---|
| Status | Finished |
| Effective start/end date | 20/10/2016 → 01/03/2019 |
Collaborative partners
- Center for Computational Mass Spectrometry
- Boston Children's Hospital
- Bristol-Myers Squibb
Keywords
- MassIVE
- Re-analysis
- publicly
- data
- proteomics
- mass spectrometry
Fingerprint
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Activities
- 1 Guest lecturers
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Linear Mixed Effects Models in Proteomics
Tue Bjerg Bennike (Lecturer)
15 Apr 2019Activity: Talks and presentations › Guest lecturers
Research output
- 1 Working paper
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Degradation of the extracellular matrix is part of the pathology of ulcerative colitis
Kirov, S., Sasson, A., Zhang, C., Chasalow, S., Dongre, A., Steen, H., Stensballe, A., Andersen, V., Birkelund, S. & Bennike, T. B., 10 Sept 2018, bioRxiv.Research output: Working paper/Preprint › Working paper › Research
Open Access
Datasets
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A normative study of the synovial fluid proteome from healthy porcine knee joints
Bennike, T. B. (Creator), Ayturk, U. (Contributor), Haslauer, C. M. (Contributor), Froehlich, J. W. (Contributor), Proffen, B. L. (Contributor), Barnaby, O. (Contributor), Birkelund, S. (Contributor), Murray, M. M. (Contributor), Warman, M. L. (Contributor), Stensballe, A. (Contributor) & Steen, H. (Contributor), PRoteomics IDEntifications Database (PRIDE), 9 Sept 2014
https://www.ebi.ac.uk/pride/archive/projects/PXD000935
Dataset