The Microbiome of Denmark

Albertsen, Mads (PI)
Nielsen, Per Halkjær (PI)
Jensen, Thomas Bygh Nymann (Project Participant)
Sørensen, Emil Aarre (Project Participant)
Sereika, Mantas (Project Participant)
Dottorini, Giulia (Project Participant)
Petriglieri, Francesca (Project Participant)
Jørgensen, Vibeke Rudkjøbing (Project Participant)
Kirkegaard, Rasmus Hansen (Project Participant)
Yang, Yu (Project Participant)
Karst, Søren Michael (Project Participant)
Giguere, Andrew Tyler (Project Participant)
Knutsson, Simon (Project Participant)
Singleton, Caitlin Margaret (Project Participant)
Dueholm, Morten Kam Dahl (Project Participant)
Mølvang Dall, Sebastian (PI)

9 Poster
5 Journal article
1 Conference abstract for conference

5 results

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2022
Metagenomic binning with assembly graph embeddings
Lamurias, A., Sereika, M., Albertsen, M., Hose, K. & Nielsen, T. D., Oct 2022, In: Bioinformatics. 38, 19, p. 4481-4487 7 p.
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
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48 Downloads (Pure)
Oxford Nanopore R10.4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing
Sereika, M., Kirkegaard, R. H., Karst, S. M., Yssing Michaelsen, T., Sørensen, E. A., Wollenberg, R. D. & Albertsen, M., 4 Jul 2022, In: Nature Methods. 19, 7, p. 823-826 4 p.
Research output: Contribution to journal › Journal article › Communication

Open Access
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38 Citations (Scopus)

7 Downloads (Pure)
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
Shaffer, J. P., Nothias, L. F., Thompson, L. R., Sanders, J. G., Salido, R. A., Couvillion, S. P., Brejnrod, A. D., Lejzerowicz, F., Haiminen, N., Lutz, H. L., Zhu, Q., Martino, C., Morton, J. T., Karthikeyan, S., Nothias-Esposito, M., Dührkop, K., Böcker, S., Kim, H. W., Aksenov, A. A., Bittremieux, W., & 31 othersMinich, J. J., Marotz, C., Bryant, M. K. M., Sanders, K., Schwartz, T., Humphrey, G., Vásquez-Baeza, Y., Tripathi, A., Parida, L., Carrieri, A. P., Beck, K. L., Das, P., González, A., McDonald, D., Ladau, J., Karst, S. M., Albertsen, M., Ackermann, G., DeReus, J., Thomas, T., Petras, D., Shade, A., Stegen, J., Song, S. J., Metz, T. O., Swafford, A. D., Dorrestein, P. C., Jansson, J. K., Gilbert, J. A., Knight, R. & the Earth Microbiome Project 500 (EMP500) Consortium, Dec 2022, In: Nature Microbiology. 7, 12, p. 2128-2150 23 p.
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
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3 Citations (Scopus)

3 Downloads (Pure)
2021
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
Singleton, C. M., Petriglieri, F., Kristensen, J. M., Kirkegaard, R. H., Michaelsen, T. Y., Andersen, M. H., Kondrotaite, Z., Karst, S. M., Dueholm, M. S., Nielsen, P. H. & Albertsen, M., 31 Mar 2021, In: Nature Communications. 12, 1, 13 p., 2009.
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
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89 Citations (Scopus)

75 Downloads (Pure)
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
Karst, S. M., Ziels, R. M., Kirkegaard, R. H., Sørensen, E. A., McDonald, D., Zhu, Q., Knight, R. & Albertsen, M., Feb 2021, In: Nature Methods. 18, 2, p. 165-169 5 p.
Research output: Contribution to journal › Journal article › Research › peer-review
101 Citations (Scopus)

The Microbiome of Denmark

Research output

Search results

Metagenomic binning with assembly graph embeddings

Oxford Nanopore R10.4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing