Find Publications

Search in all content

Filters for Publications

Search concepts
Selected filters

Publication Year

  • 2020
  • 2019
  • 2018
  • 2017
  • 2016
  • 2015
  • 2014
  • 2013
  • 2012
  • 2011

Author

  • Per Halkjær Nielsen
2012

Direct sequencing and RipSeq interpretation as a tool for identification of polymicrobial bacteremias

Wolff, T. Y., Eickhardt-Sørensen, S. R., Moser, C., Bjarnsholt, T., Nielsen, P. H., Høiby, N., Lorenzen, J. & Thomsen, T. R., 31 Mar 2012. 1 p.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

File
152 Downloads (Pure)
2013

Metagenomes obtained by "deep sequencing" - what do they tell about the EBPR communities?

Albertsen, M., Saunders, A. M., Nielsen, K. L. & Nielsen, P. H., 2013, In : Water Science and Technology. 68, 9, p. 1959-1968 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

7 Citations (Scopus)
2019

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta

Moeller, F. U., Webster, N. S., Herbold, C. W., Behnam, F., Domman, D., Albertsen, M., Mooshammer, M., Markert, S., Turaev, D., Becher, D., Rattei, T., Schweder, T., Richter, A., Watzka, M., Nielsen, P. H. & Wagner, M., 1 Oct 2019, In : Environmental Microbiology. 21, 10, p. 3831-3854 24 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
3 Citations (Scopus)
10 Downloads (Pure)
2014

Influence of shear on nitrification rates in a membrane bioreactor

Lou, M. A., Larsen, P., Nielsen, P. H. & Bak, S. N., 1 Jan 2014, In : Water Science and Technology. 69, 8, p. 1705-1711 7 p.

Research output: Contribution to journalJournal articleResearchpeer-review

1 Citation (Scopus)
2018

Denitrification activity of polyphosphate accumulating organisms (PAOs) in full-scale wastewater treatment plants

Lanham, A. B., Oehmen, A., Carvalho, G., Saunders, A. M., Nielsen, P. H. & Reis, M. A. M., 29 Dec 2018, In : Water Science and Technology. 78, 12, p. 2449-2458 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

6 Citations (Scopus)
2017

Non-denitrifying polyphosphate accumulating organisms obviate requirement for anaerobic condition

Cokro, A. A., Law, Y., Williams, R. B. H., Cao, Y., Nielsen, P. H. & Wuertz, S., 15 Mar 2017, In : Water Research. 111, p. 393-403 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

16 Citations (Scopus)
2016

Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor

Schiffmann, C. L., Otto, W., Hansen, R., Nielsen, P. H., Adrian, L., Seifert, J., von Bergen, M. & Jehmlich, N., 1 Jun 2016, In : Data in Brief. 7, p. 253-256 4 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
2 Citations (Scopus)
2013

Functional Amyloids in Bacteria

Dueholm, M. S., Nielsen, P. H., Chapman, M. & Otzen, D., 27 Jan 2013, Amyloid Fibrils and Prefibrillar Aggregates: Molecular and Biological Properties. Otzen, D. E. (ed.). Wiley-VCH, p. 411-438 28 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

10 Citations (Scopus)
2017

A new class of hybrid secretion system is employed in Pseudomonas amyloid biogenesis

Rouse, S. L., Hawthorne, W. J., Berry, J-L., Chorev, D. S., Ionescu, S. A., Lambert, S., Stylianou, F., Ewert, W., Mackie, U., Morgan, R. M. L., Otzen, D., Herbst, F-A., Nielsen, P. H., Dueholm, M., Bayley, H., Robinson, C. V., Hare, S. & Matthews, S., 15 Aug 2017, In : Nature Communications. 8, 1, 13 p., 263.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
21 Citations (Scopus)
2018

In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina

Behrendt, L., Raina, J-B., Lutz, A., Kot, W., Albertsen, M., Halkjær-Nielsen, P., Sørensen, S. J., Larkum, A. W. & Kühl, M., Feb 2018, In : I S M E Journal. 12, 2, p. 556-567 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
3 Citations (Scopus)
2017

Den Mikrobiologiske Database for Rådnetanke

Andersen, M. H., Nielsen, P. H., Hansen, A. A. & Høgh, J., Jun 2017, 81 p.

Research output: Book/ReportReport

2014

Complete Genome Sequence of Pseudomonas sp. UK4, a Model Organism for Studies of Functional Amyloids in Pseudomonas

Dueholm, M. S., Danielsen, H. N. & Nielsen, P. H., 2014, In : Genome Announcements. 2, 5, e00898-14.

Research output: Contribution to journalJournal articleResearch

Open Access
6 Citations (Scopus)
2013

Metagenomics as a tool to obtain full genomes of process-critical bacteria in engineered systems

Albertsen, M., Hugenholtz, P., Tyson, G. W., Nielsen, K. L. & Nielsen, P. H., 2013.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

2016

Amyloids – a neglected child of the slime

Dueholm, M. S. & Nielsen, P. H., 2016, The Perfect Slime: Microbial Extracellular Polymeric Substances (EPS). Flemming, H-C., Neu, T. R. & Wingender, J. (eds.). London: IWA Publishing, p. 113-133 21 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

2012

Curli functional amyloid systems are phylogenetically widespread and display large diversity in operon and protein structure

Dueholm, M. S., Albertsen, M., Otzen, D. & Nielsen, P. H., 2012, In : P L o S One. 7, 12, 10 p., e51274.

Research output: Contribution to journalJournal articleResearchpeer-review

72 Citations (Scopus)

Comparison of metagenomes from EBPR wastewater treatment plants to other environments shows a conserved functional potential

Albertsen, M., Saunders, A. M., Nielsen, K. L. & Nielsen, P. H., May 2012.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

File
332 Downloads (Pure)

Identity and quantity of microorganisms in necrotising fasciitis determined by culture based and molecular methods

Rudkjøbing, V. B., Thomsen, T. R., Nielsen, P. H., Melton-Kreft, R., Ahmed, A., Ehrlich, G. D. & Moser, C., 2012. 1 p.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

File
138 Downloads (Pure)
2014

The Family Saprospiraceae

McIlroy, S. J. & Nielsen, P. H., 2014, The Prokaryotes: Other Major Lineages of Bacteria and The Archaea. Rosenberg, E., Delong, E. F., Lory, S., Stackebrandt, E. & Thompson, F. (eds.). 4 ed. Heidelberg: Springer Science+Business Media, Vol. 11. p. 863-889 27 p.

Research output: Contribution to book/anthology/report/conference proceedingBook chapterResearchpeer-review

46 Citations (Scopus)
2020

“Candidatus Galacturonibacter soehngenii” Shows Acetogenic Catabolism of Galacturonic Acid but Lacks a Canonical Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase Complex

Valk, L. C., Diender, M., Stouten, G. R., Petersen, J. F., Nielsen, P. H., Dueholm, M. S., Pronk, J. T. & van Loosdrecht, M. C. M., 29 Jan 2020, In : Frontiers in Microbiology. 11, 63.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
1 Citation (Scopus)
2019

Extraction and quantification of polyphosphates in activated sludge from waste water treatment plants by 31P NMR spectroscopy

Staal, L. B., Petersen, A. B., Jørgensen, C. A., Nielsen, U. G., Nielsen, P. H. & Reitzel, K., 15 Jun 2019, In : Water Research. 157, p. 346-355 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

3 Citations (Scopus)
2016

Dynamics of the Fouling Layer Microbial Community in a Membrane Bioreactor

Ziegler, A. S., McIlroy, S. J., Larsen, P., Albertsen, M., Hansen, A. A., Heinen, N. & Nielsen, P. H., 11 Jun 2016, In : P L o S One. 11, 7, 14 p., e0158811.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
21 Citations (Scopus)
265 Downloads (Pure)
2015

Functional bacterial amyloid increases Pseudomonas biofilm hydrophobicity and stiffness

Zeng, G., Vad, B. S., Dueholm, M. S., Christiansen, G., Nilsson, M., Tolker-Nielsen, T., Nielsen, P. H., Meyer, R. L. & Otzen, D., 2015, In : Frontiers in Microbiology. 6, 1099.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
58 Citations (Scopus)
2013

Irreversible fouling of membrane bioreactors due to formation of a non-biofilm gel-like layer

Poorasgari, E., Larsen, P., Zheng, X., Nielsen, P. H., Keiding, K. & Christensen, M. L., 2013, Irreversible fouling of membrane bioreactors due to formation of a non-biofilm gel-like layer. 10 p.

Research output: Contribution to book/anthology/report/conference proceedingArticle in proceedingResearch

File
379 Downloads (Pure)
2011

Slammineraliseringsanlæg: hvordan påvirker slammet bedene?

Christensen, M. L., Dominiak, D. M., Keiding, K. & Nielsen, P. H., 2011, In : Spildevandsteknisk Tidsskrift. 5, p. 44-45 2 p.

Research output: Contribution to journalJournal articleResearch

Gravity drainage of activated sludge: new experimental method and considerations of settling velocity, specific cake resistance and cake compressibility

Dominiak, D. M., Christensen, M. L., Keiding, K. & Nielsen, P. H., 2011, In : Water Research. 45, 5, p. 1941-1950 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

27 Citations (Scopus)
2015

Strong bacterial flocs are important for filtration properties of membrane bioreactors

Hansen, S. H., Jørgensen, M. K., Christensen, M. L. & Nielsen, P. H., 9 Nov 2015.

Research output: Contribution to conference without publisher/journalPosterResearch

Open Access
2013

Filtration properties of activated sludge in municipal MBR wastewater treatment plants are related to microbial community structure

Bugge, T. V., Larsen, P., Saunders, A. M., Kragelund, C., Wybrandt, L., Keiding, K., Christensen, M. L. & Nielsen, P. H., 2013, In : Water Research. 47, 17, p. 6719-6730 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

23 Citations (Scopus)
2015

Dewatering in biological wastewater treatment: a review

Christensen, M. L., Keiding, K., Nielsen, P. H. & Jørgensen, M. K., 2015, In : Water Research. 82, p. 14-24 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

102 Citations (Scopus)
2013

På vej til at mindske fouling i membranbioreaktorer (MBR)

Larsen, P., Christensen, M. L. & Nielsen, P. H., 2013, In : Spildevandsteknisk Tidsskrift. 41, 4, p. 34-35

Research output: Contribution to journalJournal articleResearch

2011

Exopolymers in mixed microbial biofilms as revealed by a metagenomic approach

Albertsen, M., Stensballe, A., Nielsen, K. L. & Nielsen, P. H., Jul 2011.

Research output: Contribution to conference without publisher/journalPosterResearch

Identification of exopolymers in mixed microbial biofilms: A metagenomic approach

Albertsen, M., K. Sørensen, D., Stensballe, A., Nielsen, K. L. & Nielsen, P. H., Oct 2011.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

2018

Searching for novel functional amyloids in biofilms

Hove Hansen, S., Danielsen, H. N., Herbst, F-A., Nielsen, P. H. & Dueholm, M. S., 27 May 2018.

Research output: Contribution to conference without publisher/journalPosterResearch

Open Access
File
15 Downloads (Pure)
2016

Direct identification of amyloids by label-free quantitative LC-MS combined with formic acid treatment

Danielsen, H. N., Hansen, S. H., Herbst, F-A., Nielsen, P. H. & Dueholm, M. S., 5 Sep 2016.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearch

Open Access
File
52 Downloads (Pure)
2016

Detection of Pathogenic Biofilms with Bacterial Amyloid Targeting Fluorescent Probe, CDy11

Jun-Young, K., Srikanta, S., Yin-Hoe, Y., Xu, W., Shochat, S. G., Nielsen, P. H., Dueholm, M. S., Otzen, D., Jungyeol, L., Santos, M. M. S. D., Hoong, Y., Nam-Young, K., Sung-Jin, P., Hawyoung, K., Seviour, T., Liang, Y., Givskov, M. & Young-Tae, C., 2016, In : Journal of the American Chemical Society. 138, 1, p. 402-407 7 p.

Research output: Contribution to journalJournal articleResearchpeer-review

40 Citations (Scopus)

Metagenomics and in situ analyses reveal Propionivibrio spp. to be abundant GAO in biological wastewater treatment systems

McIlroy, S. J., Albertsen, M., Stokholm-Bjerregaard, M., Karst, S. M. & Nielsen, P. H., 25 Aug 2016.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

File
64 Downloads (Pure)
2014

Low Temperature Partial Nitritation/Anammox in a Moving Bed Biofilm Reactor treating low strength Wastewater

Gilbert, E., Agrawal, S., Karst, S. M., Horn, H., Nielsen, P. H. & Lackner, S., 1 Jul 2014, In : Environmental Science & Technology (Washington). 48, 15, p. 8784–8792

Research output: Contribution to journalJournal articleResearchpeer-review

190 Citations (Scopus)
2013

DNA Extraction and Primer Selection

Karst, S. M., Nielsen, P. H., Albertsen, M. & Ziegler, A. S., 7 Jul 2013.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearch

2018

Pleural infection: a retrospective study of clinical outcome and the correlation to known etiology, co-morbidity and treatment factors

Meyer, C. N., Armbruster, K., Kemp, M., Thomsen, T. R., Dessau, R. B. & Danish pleura empyema group (DPEG), 12 Oct 2018, In : BMC Pulmonary Medicine. 18, p. 160 160.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
1 Citation (Scopus)
132 Downloads (Pure)
2014

The contribution of various sludge fractions to fouling in membrane bioreactors

Jørgensen, M. K., Justesen, R., Niessen, W., Hove Hansen, S., Nielsen, P. H. & Christensen, M. L., 9 Sep 2014.

Research output: Contribution to conference without publisher/journalPosterResearch

File
413 Downloads (Pure)
2017

The role of inoculum and reactor configuration for microbial community composition and dynamics in mainstream partial nitritation anammox reactors

Agrawal, S., Karst, S. M., Gilbert, E. M., Horn, H., Nielsen, P. H. & Lackner, S., 2017, In : MicrobiologyOpen. 6, 4, e00456.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
19 Citations (Scopus)
129 Downloads (Pure)
2014

Mixed Culture PHA Production With Alternating Feedstocks: Process Robustness And Population Dynamics

Oliveira, C. S. S., Duque, A. F., Carvalho, G., Gouveia, A. V., Karst, S. M., Nielsen, P. H. & Reis, M. A. M., 2014.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

2015

Ammonia and temperature determine potential clustering in the anaerobic digestion microbiome

Vrieze, J. D., Saunders, A. M., He, Y., Fang, J., Nielsen, P. H., Verstraete, W. & Boon, N., 15 May 2015, In : Water Research. 75, p. 312-323 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

137 Citations (Scopus)
2012

Detection and identification of microbes in prosthetic joint infections by culture and molecular methods

Xu, Y., Schønheyder, H. C., Ehrlich, G., Nielsen, P. H. & Thomsen, T. R., 2012. 1 p.

Research output: Contribution to conference without publisher/journalPosterResearchpeer-review

Characterization of microbes in prosthetic joint specimens by culture-independent molecular methods

Thomsen, T. R., Xu, Y., Rudkjøbing, V. B., Wolff, T. Y., Simonsen, O., Bjarnsholt, T., Moser, C., Høiby, N., Lorenzen, J., Kirketerp-Møller, K., Schønheyder, H. C. & Nielsen, P. H., 2012. 1 p.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearch

File
60 Downloads (Pure)
2017
File
101 Downloads (Pure)
2017

Read error correction of oxford nanopore reads using molecular tagging

Kirkegaard, R. H., Karst, S. M., Dueholm, M. S., Nielsen, P. H. & Albertsen, M., 2017.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearch

2015

Correlating the microbial community composition of anaerobic digesters to process parameters

Kirkegaard, R. H., McIlroy, S. J., Larsen, P., Karst, S. M., Albertsen, M. & Nielsen, P. H., 2015.

Research output: Contribution to conference without publisher/journalConference abstract for conferenceResearchpeer-review

2019
File
29 Downloads (Pure)