EVpedia: A Community Web Portal for Extracellular Vesicles Research

Dae-Kyum Kim; Jaewook Lee; Sae Rom Kim; Dong-Sic Choi; Yae Jin Yoon; Ji Hyun Kim; Gyeongyun Go; Dinh Nhung; Kahye Hong; Su Chul Jang; Si-Hyun Kim; Kyong-Su Park; Oh Youn Kim; Hyun Taek Park; Ji Hye Seo; Elena Aikawa; Monika Baj-Krzyworzeka; Bas W M van Balkom; Mattias Belting; Lionel Blanc; Vincent Bond; Antonella Bongiovanni; Francesc E Borràs; Luc Buée; Edit I Buzás; Lesley Cheng; Aled Clayton; Emanuele Cocucci; Charles S Dela Cruz; Dominic M Desiderio; Dolores Di Vizio; Karin Ekström; Juan M Falcon-Perez; Chris Gardiner; Bernd Giebel; David W Greening; Julia Christina Gross; Dwijendra Gupta; An Hendrix; Andrew F Hill; Michelle M Hill; Esther Nolte-'t Hoen; Do Won Hwang; Jameel Inal; Medicharla V Jagannadham; Muthuvel Jayachandran; Young-Koo Jee; Malene Jørgensen; Kwang Pyo Kim; Yoon-Keun Kim; Thomas Kislinger; Cecilia Lässer; Dong Soo Lee; Hakmo Lee; Johannes van Leeuwen; Thomas Lener; Ming-Lin Liu; Jan Lötvall; Antonio Marcilla; Suresh Mathivanan; Andreas Möller; Jess Morhayim; François Mullier; Irina Nazarenko; Rienk Nieuwland; Diana N Nunes; Ken Pang; Jaesung Park; Tushar Patel; Gabriella Pocsfalvi; Hernando Del Portillo; Ulrich Putz; Marcel I Ramirez; Marcio L Rodrigues; Tae-Young Roh; Felix Royo; Susmita Sahoo; Raymond Schiffelers; Shivani Sharma; Pia Siljander; Richard J Simpson; Carolina Soekmadji; Philip Stahl; Allan Stensballe; Ewa Stępień; Hidetoshi Tahara; Arne Trummer; Hadi Valadi; Laura J Vella; Sun Nyunt Wai; Kenneth Witwer; María Yáñez-Mó; Hyewon Youn; Reinhard Zeidler; Yong Song Gho

doi:10.1093/bioinformatics/btu741

EVpedia: A Community Web Portal for Extracellular Vesicles Research

Dae-Kyum Kim, Jaewook Lee, Sae Rom Kim, Dong-Sic Choi, Yae Jin Yoon, Ji Hyun Kim, Gyeongyun Go, Dinh Nhung, Kahye Hong, Su Chul Jang, Si-Hyun Kim, Kyong-Su Park, Oh Youn Kim, Hyun Taek Park, Ji Hye Seo, Elena Aikawa, Monika Baj-Krzyworzeka, Bas W M van Balkom, Mattias Belting, Lionel BlancVincent Bond, Antonella Bongiovanni, Francesc E Borràs, Luc Buée, Edit I Buzás, Lesley Cheng, Aled Clayton, Emanuele Cocucci, Charles S Dela Cruz, Dominic M Desiderio, Dolores Di Vizio, Karin Ekström, Juan M Falcon-Perez, Chris Gardiner, Bernd Giebel, David W Greening, Julia Christina Gross, Dwijendra Gupta, An Hendrix, Andrew F Hill, Michelle M Hill, Esther Nolte-'t Hoen, Do Won Hwang, Jameel Inal, Medicharla V Jagannadham, Muthuvel Jayachandran, Young-Koo Jee, Malene Jørgensen, Kwang Pyo Kim, Yoon-Keun Kim, Thomas Kislinger, Cecilia Lässer, Dong Soo Lee, Hakmo Lee, Johannes van Leeuwen, Thomas Lener, Ming-Lin Liu, Jan Lötvall, Antonio Marcilla, Suresh Mathivanan, Andreas Möller, Jess Morhayim, François Mullier, Irina Nazarenko, Rienk Nieuwland, Diana N Nunes, Ken Pang, Jaesung Park, Tushar Patel, Gabriella Pocsfalvi, Hernando Del Portillo, Ulrich Putz, Marcel I Ramirez, Marcio L Rodrigues, Tae-Young Roh, Felix Royo, Susmita Sahoo, Raymond Schiffelers, Shivani Sharma, Pia Siljander, Richard J Simpson, Carolina Soekmadji, Philip Stahl, Allan Stensballe, Ewa Stępień, Hidetoshi Tahara, Arne Trummer, Hadi Valadi, Laura J Vella, Sun Nyunt Wai, Kenneth Witwer, María Yáñez-Mó, Hyewon Youn, Reinhard Zeidler, Yong Song Gho

Research output: Contribution to journal › Journal article › Research › peer-review

287 Citations (Scopus)

Abstract

MOTIVATION: Extracellular vesicles are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for extracellular vesicle-related publications and vesicular components are currently challenging.

RESULTS: We present an improved version of EVpedia, a public database for extracellular vesicles research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools, and a personalized function. EVpedia includes 6,879 publications, 172,080 vesicular components from 263 high-throughput datasets, and has been accessed >65,000 times from >750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of extracellular vesicle research. Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.

CONTACT: ysgho@postech.ac.kr.

Original language	English
Journal	Bioinformatics
Volume	31
Issue number	6
Pages (from-to)	933-939
Number of pages	7
ISSN	1367-4803
DOIs	https://doi.org/10.1093/bioinformatics/btu741
Publication status	Published - 2015

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http://bioinformatics.oxfordjournals.org/content/31/6/933.full.pdf+html

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Kim, D-K., Lee, J., Kim, S. R., Choi, D-S., Yoon, Y. J., Kim, J. H., Go, G., Nhung, D., Hong, K., Jang, S. C., Kim, S-H., Park, K-S., Kim, O. Y., Park, H. T., Seo, J. H., Aikawa, E., Baj-Krzyworzeka, M., van Balkom, B. W. M., Belting, M., ... Gho, Y. S. (2015). EVpedia: A Community Web Portal for Extracellular Vesicles Research. Bioinformatics, 31(6), 933-939. https://doi.org/10.1093/bioinformatics/btu741

@article{e965fa78b94e42d3bf99462f36be5c8a,

title = "EVpedia: A Community Web Portal for Extracellular Vesicles Research",

abstract = "MOTIVATION: Extracellular vesicles are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for extracellular vesicle-related publications and vesicular components are currently challenging.RESULTS: We present an improved version of EVpedia, a public database for extracellular vesicles research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools, and a personalized function. EVpedia includes 6,879 publications, 172,080 vesicular components from 263 high-throughput datasets, and has been accessed >65,000 times from >750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of extracellular vesicle research. Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.CONTACT: ysgho@postech.ac.kr.",

author = "Dae-Kyum Kim and Jaewook Lee and Kim, {Sae Rom} and Dong-Sic Choi and Yoon, {Yae Jin} and Kim, {Ji Hyun} and Gyeongyun Go and Dinh Nhung and Kahye Hong and Jang, {Su Chul} and Si-Hyun Kim and Kyong-Su Park and Kim, {Oh Youn} and Park, {Hyun Taek} and Seo, {Ji Hye} and Elena Aikawa and Monika Baj-Krzyworzeka and {van Balkom}, {Bas W M} and Mattias Belting and Lionel Blanc and Vincent Bond and Antonella Bongiovanni and Borr{\`a}s, {Francesc E} and Luc Bu{\'e}e and Buz{\'a}s, {Edit I} and Lesley Cheng and Aled Clayton and Emanuele Cocucci and {Dela Cruz}, {Charles S} and Desiderio, {Dominic M} and {Di Vizio}, Dolores and Karin Ekstr{\"o}m and Falcon-Perez, {Juan M} and Chris Gardiner and Bernd Giebel and Greening, {David W} and Gross, {Julia Christina} and Dwijendra Gupta and An Hendrix and Hill, {Andrew F} and Hill, {Michelle M} and {Nolte-'t Hoen}, Esther and Hwang, {Do Won} and Jameel Inal and Jagannadham, {Medicharla V} and Muthuvel Jayachandran and Young-Koo Jee and Malene J{\o}rgensen and Kim, {Kwang Pyo} and Yoon-Keun Kim and Thomas Kislinger and Cecilia L{\"a}sser and Lee, {Dong Soo} and Hakmo Lee and {van Leeuwen}, Johannes and Thomas Lener and Ming-Lin Liu and Jan L{\"o}tvall and Antonio Marcilla and Suresh Mathivanan and Andreas M{\"o}ller and Jess Morhayim and Fran{\c c}ois Mullier and Irina Nazarenko and Rienk Nieuwland and Nunes, {Diana N} and Ken Pang and Jaesung Park and Tushar Patel and Gabriella Pocsfalvi and {Del Portillo}, Hernando and Ulrich Putz and Ramirez, {Marcel I} and Rodrigues, {Marcio L} and Tae-Young Roh and Felix Royo and Susmita Sahoo and Raymond Schiffelers and Shivani Sharma and Pia Siljander and Simpson, {Richard J} and Carolina Soekmadji and Philip Stahl and Allan Stensballe and Ewa St{\c e}pie{\'n} and Hidetoshi Tahara and Arne Trummer and Hadi Valadi and Vella, {Laura J} and Wai, {Sun Nyunt} and Kenneth Witwer and Mar{\'i}a Y{\'a}{\~n}ez-M{\'o} and Hyewon Youn and Reinhard Zeidler and Gho, {Yong Song}",

year = "2015",

doi = "10.1093/bioinformatics/btu741",

language = "English",

volume = "31",

pages = "933--939",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "6",

}

Kim, D-K, Lee, J, Kim, SR, Choi, D-S, Yoon, YJ, Kim, JH, Go, G, Nhung, D, Hong, K, Jang, SC, Kim, S-H, Park, K-S, Kim, OY, Park, HT, Seo, JH, Aikawa, E, Baj-Krzyworzeka, M, van Balkom, BWM, Belting, M, Blanc, L, Bond, V, Bongiovanni, A, Borràs, FE, Buée, L, Buzás, EI, Cheng, L, Clayton, A, Cocucci, E, Dela Cruz, CS, Desiderio, DM, Di Vizio, D, Ekström, K, Falcon-Perez, JM, Gardiner, C, Giebel, B, Greening, DW, Gross, JC, Gupta, D, Hendrix, A, Hill, AF, Hill, MM, Nolte-'t Hoen, E, Hwang, DW, Inal, J, Jagannadham, MV, Jayachandran, M, Jee, Y-K, Jørgensen, M, Kim, KP, Kim, Y-K, Kislinger, T, Lässer, C, Lee, DS, Lee, H, van Leeuwen, J, Lener, T, Liu, M-L, Lötvall, J, Marcilla, A, Mathivanan, S, Möller, A, Morhayim, J, Mullier, F, Nazarenko, I, Nieuwland, R, Nunes, DN, Pang, K, Park, J, Patel, T, Pocsfalvi, G, Del Portillo, H, Putz, U, Ramirez, MI, Rodrigues, ML, Roh, T-Y, Royo, F, Sahoo, S, Schiffelers, R, Sharma, S, Siljander, P, Simpson, RJ, Soekmadji, C, Stahl, P, Stensballe, A, Stępień, E, Tahara, H, Trummer, A, Valadi, H, Vella, LJ, Wai, SN, Witwer, K, Yáñez-Mó, M, Youn, H, Zeidler, R & Gho, YS 2015, 'EVpedia: A Community Web Portal for Extracellular Vesicles Research', Bioinformatics, vol. 31, no. 6, pp. 933-939. https://doi.org/10.1093/bioinformatics/btu741

TY - JOUR

T1 - EVpedia

T2 - A Community Web Portal for Extracellular Vesicles Research

AU - Kim, Dae-Kyum

AU - Lee, Jaewook

AU - Kim, Sae Rom

AU - Choi, Dong-Sic

AU - Yoon, Yae Jin

AU - Kim, Ji Hyun

AU - Go, Gyeongyun

AU - Nhung, Dinh

AU - Hong, Kahye

AU - Jang, Su Chul

AU - Kim, Si-Hyun

AU - Park, Kyong-Su

AU - Kim, Oh Youn

AU - Park, Hyun Taek

AU - Seo, Ji Hye

AU - Aikawa, Elena

AU - Baj-Krzyworzeka, Monika

AU - van Balkom, Bas W M

AU - Belting, Mattias

AU - Blanc, Lionel

AU - Bond, Vincent

AU - Bongiovanni, Antonella

AU - Borràs, Francesc E

AU - Buée, Luc

AU - Buzás, Edit I

AU - Cheng, Lesley

AU - Clayton, Aled

AU - Cocucci, Emanuele

AU - Dela Cruz, Charles S

AU - Desiderio, Dominic M

AU - Di Vizio, Dolores

AU - Ekström, Karin

AU - Falcon-Perez, Juan M

AU - Gardiner, Chris

AU - Giebel, Bernd

AU - Greening, David W

AU - Gross, Julia Christina

AU - Gupta, Dwijendra

AU - Hendrix, An

AU - Hill, Andrew F

AU - Hill, Michelle M

AU - Nolte-'t Hoen, Esther

AU - Hwang, Do Won

AU - Inal, Jameel

AU - Jagannadham, Medicharla V

AU - Jayachandran, Muthuvel

AU - Jee, Young-Koo

AU - Jørgensen, Malene

AU - Kim, Kwang Pyo

AU - Kim, Yoon-Keun

AU - Kislinger, Thomas

AU - Lässer, Cecilia

AU - Lee, Dong Soo

AU - Lee, Hakmo

AU - van Leeuwen, Johannes

AU - Lener, Thomas

AU - Liu, Ming-Lin

AU - Lötvall, Jan

AU - Marcilla, Antonio

AU - Mathivanan, Suresh

AU - Möller, Andreas

AU - Morhayim, Jess

AU - Mullier, François

AU - Nazarenko, Irina

AU - Nieuwland, Rienk

AU - Nunes, Diana N

AU - Pang, Ken

AU - Park, Jaesung

AU - Patel, Tushar

AU - Pocsfalvi, Gabriella

AU - Del Portillo, Hernando

AU - Putz, Ulrich

AU - Ramirez, Marcel I

AU - Rodrigues, Marcio L

AU - Roh, Tae-Young

AU - Royo, Felix

AU - Sahoo, Susmita

AU - Schiffelers, Raymond

AU - Sharma, Shivani

AU - Siljander, Pia

AU - Simpson, Richard J

AU - Soekmadji, Carolina

AU - Stahl, Philip

AU - Stensballe, Allan

AU - Stępień, Ewa

AU - Tahara, Hidetoshi

AU - Trummer, Arne

AU - Valadi, Hadi

AU - Vella, Laura J

AU - Wai, Sun Nyunt

AU - Witwer, Kenneth

AU - Yáñez-Mó, María

AU - Youn, Hyewon

AU - Zeidler, Reinhard

AU - Gho, Yong Song

PY - 2015

Y1 - 2015

N2 - MOTIVATION: Extracellular vesicles are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for extracellular vesicle-related publications and vesicular components are currently challenging.RESULTS: We present an improved version of EVpedia, a public database for extracellular vesicles research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools, and a personalized function. EVpedia includes 6,879 publications, 172,080 vesicular components from 263 high-throughput datasets, and has been accessed >65,000 times from >750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of extracellular vesicle research. Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.CONTACT: ysgho@postech.ac.kr.

AB - MOTIVATION: Extracellular vesicles are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for extracellular vesicle-related publications and vesicular components are currently challenging.RESULTS: We present an improved version of EVpedia, a public database for extracellular vesicles research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools, and a personalized function. EVpedia includes 6,879 publications, 172,080 vesicular components from 263 high-throughput datasets, and has been accessed >65,000 times from >750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of extracellular vesicle research. Availability and implementation: The web site was implemented in PHP, Java, MySQL and Apache, and is freely available at http://evpedia.info.CONTACT: ysgho@postech.ac.kr.

U2 - 10.1093/bioinformatics/btu741

DO - 10.1093/bioinformatics/btu741

M3 - Journal article

C2 - 25388151

SN - 1367-4803

VL - 31

SP - 933

EP - 939

JO - Bioinformatics

JF - Bioinformatics

IS - 6

ER -

EVpedia: A Community Web Portal for Extracellular Vesicles Research

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