Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov

Peter Kämpfer; David Fuglsang-Damgaard; Søren Overballe-Petersen; Henrik Hasman; Anette M Hammerum; Kurt Fuursted; Jochen Blom; Stefanie P Glaeser; Frank Hansen

doi:10.1099/ijsem.0.003918

Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov

Peter Kämpfer, David Fuglsang-Damgaard, Søren Overballe-Petersen, Henrik Hasman, Anette M Hammerum, Kurt Fuursted, Jochen Blom, Stefanie P Glaeser, Frank Hansen

Research output: Contribution to journal › Journal article › Research › peer-review

7 Citations (Scopus)

Abstract

The taxonomic status of all Pseudocitrobacter species was re-evaluated by comparative genomics based on whole genome sequencing. As a result, it is obvious that Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis. In addition, genome-based analysis of strain CPO20170097T, isolated from a patient in northern Denmark was allocated to the genus Pseudocitrobacter. This strain showed significant genotypic and phenotypic differences from P. faecalis and it is proposed that this strain represents a novel species of the genus, for which the name Pseudocitrobacter vendiensis sp. nov. is proposed with the type strain CPO20170097T (=CCUG 73096T=LMG 31042T).

Original language	English
Journal	International Journal of Systematic and Evolutionary Microbiology
Volume	70
Issue number	2
Pages (from-to)	1315–1320
Number of pages	6
ISSN	1466-5026
DOIs	https://doi.org/10.1099/ijsem.0.003918
Publication status	Published - 2020

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Kämpfer, P., Fuglsang-Damgaard, D., Overballe-Petersen, S., Hasman, H., Hammerum, A. M., Fuursted, K., Blom, J., Glaeser, S. P., & Hansen, F. (2020). Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov. International Journal of Systematic and Evolutionary Microbiology, 70(2), 1315–1320. Advance online publication. https://doi.org/10.1099/ijsem.0.003918

Kämpfer, Peter ; Fuglsang-Damgaard, David ; Overballe-Petersen, Søren et al. / Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing : Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov. In: International Journal of Systematic and Evolutionary Microbiology. 2020 ; Vol. 70, No. 2. pp. 1315–1320.

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title = "Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov",

abstract = "The taxonomic status of all Pseudocitrobacter species was re-evaluated by comparative genomics based on whole genome sequencing. As a result, it is obvious that Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis. In addition, genome-based analysis of strain CPO20170097T, isolated from a patient in northern Denmark was allocated to the genus Pseudocitrobacter. This strain showed significant genotypic and phenotypic differences from P. faecalis and it is proposed that this strain represents a novel species of the genus, for which the name Pseudocitrobacter vendiensis sp. nov. is proposed with the type strain CPO20170097T (=CCUG 73096T=LMG 31042T).",

author = "Peter K{\"a}mpfer and David Fuglsang-Damgaard and S{\o}ren Overballe-Petersen and Henrik Hasman and Hammerum, {Anette M} and Kurt Fuursted and Jochen Blom and Glaeser, {Stefanie P} and Frank Hansen",

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doi = "10.1099/ijsem.0.003918",

language = "English",

volume = "70",

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Kämpfer, P, Fuglsang-Damgaard, D, Overballe-Petersen, S, Hasman, H, Hammerum, AM, Fuursted, K, Blom, J, Glaeser, SP & Hansen, F 2020, 'Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov', International Journal of Systematic and Evolutionary Microbiology, vol. 70, no. 2, pp. 1315–1320. https://doi.org/10.1099/ijsem.0.003918

Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov. / Kämpfer, Peter; Fuglsang-Damgaard, David; Overballe-Petersen, Søren et al.
In: International Journal of Systematic and Evolutionary Microbiology, Vol. 70, No. 2, 2020, p. 1315–1320.

Research output: Contribution to journal › Journal article › Research › peer-review

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T1 - Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing

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AU - Kämpfer, Peter

AU - Fuglsang-Damgaard, David

AU - Overballe-Petersen, Søren

AU - Hasman, Henrik

AU - Hammerum, Anette M

AU - Fuursted, Kurt

AU - Blom, Jochen

AU - Glaeser, Stefanie P

AU - Hansen, Frank

PY - 2020

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AB - The taxonomic status of all Pseudocitrobacter species was re-evaluated by comparative genomics based on whole genome sequencing. As a result, it is obvious that Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis. In addition, genome-based analysis of strain CPO20170097T, isolated from a patient in northern Denmark was allocated to the genus Pseudocitrobacter. This strain showed significant genotypic and phenotypic differences from P. faecalis and it is proposed that this strain represents a novel species of the genus, for which the name Pseudocitrobacter vendiensis sp. nov. is proposed with the type strain CPO20170097T (=CCUG 73096T=LMG 31042T).

U2 - 10.1099/ijsem.0.003918

DO - 10.1099/ijsem.0.003918

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Kämpfer P, Fuglsang-Damgaard D, Overballe-Petersen S, Hasman H, Hammerum AM, Fuursted K et al. Taxonomic reassessment of the genus Pseudocitrobacter using whole genome sequencing: Pseudocitrobacter anthropi is a later heterotypic synonym of Pseudocitrobacter faecalis and description of Pseudocitrobacter vendiensis sp. nov. International Journal of Systematic and Evolutionary Microbiology. 2020;70(2):1315–1320. Epub 2019 Dec 20. doi: 10.1099/ijsem.0.003918