bcbio/bcbio-nextgen:

  • Brooke Chapman (Creator)
  • Rory Kirchner (Creator)
  • Lorena Pantano (Creator)
  • Sergey Naumenko (Creator)
  • Sanne De Smet (Creator)
  • Luca Beltrame (Creator)
  • Tetiana Khotiainsteva (Creator)
  • Ilya Sytchev (Creator)
  • Roman Valls Guimera (Creator)
  • John Kern (Creator)
  • Christian Brueffer (Creator)
  • Vlad Savelyev (Creator)
  • Gary Chinga-Carrasco (Creator)
  • Mario Giovacchini (Creator)
  • Miika Ahdesmaki (Creator)
  • Pan Tang (Creator)
  • Sehrish Kanwal (Creator)
  • John Porter (Creator)
  • Steffen Möller (Creator)
  • Vang Le (Creator)
  • Alexandru Coman (Creator)
  • bogdang989 (Creator)
  • Valentine Svensson (Creator)
  • B B Pedersen (Creator)
  • Jeff Hammerbacher (Creator)
  • Stefan M. Edwards (Creator)
  • Meeta Mistry (Creator)
  • apastore (Creator)
  • Peter Cock (Creator)
  • Joon Yoon (Creator)

Dataset

Description

Fix vcf header bug: T/N SAMPLE lines are back - needed for import to SolveBio add strandedness: auto for -l A option in salmon report 10x more peaks in CHIP/ATAC-seq - use 0.05 qvalue fix misleading RNA-seq duplicated reads statistics: thanks @sib-bcf reorganize conda environments snpEff 5.0 strandedness: auto document WGBS pipeline steps make --local an option, not default in bismark alignment - too slow bcbioRNASeq update to 0.3.44 pureCN update to 2.0.1 octopus update to 0.7.4
Date made available15 Dec 2021
PublisherZenodo

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