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Research profile
Bioprocesses have great potential for the sustainable production of numerous products, but are often not (yet) suitable for the application on an industrial scale due to their complexity and concomitantly low product yields.
Microorganisms have a large number of possible synthesis routes that are still far from being fully discovered, so are process-relevant regulation and cell-cell / cell-reactor interaction. Parallel syntheses of different microorganisms in so-called synthetic co- and mixed cultivations beside traditional mono-cultivations have a great potential for novel processes and products. In all those cultivations, the formation of subpopulations (population heterogeneities) can be decisive for any economically viable process performance during scale-up and industrial application.
Therefore, we aim to develop and optimize bioprocesses under the consideration of single-cell physiology and population aspects in mono-, co- and mixed cultivations up to a mini-plant environment. Target organisms include aerobic, micro-aerotolerant or anaerobic protagonists for food, feed and fine chemical production. The integration of image-based and other optical analytical technologies from the early-stage process development on to allow for a close to real-time monitoring and control of microbial performance is an important part of our work. Examples of application are:
- Oleaginous yeast
- Filamentous, pellet forming microorganisms
- Synthetic co-cultures of yeast and lactic acid bacteria
Microbial hydrolysis has a great potential to convert biogenic residues for value addition in non-sterile environments and with a considerably low energy input. The challenge of biotechnology to use cheap, non-competing substrate can be resolved. Process coupling of (undefined or synthetic) mixed and mono-cultivation to achieve a broad usability of residual, recalcitrant feedstock is optimized through knowledge-driven bioreactor and process design, direct bioaugmentation and other means coupled to suitable monitoring technology. This includes the quantification and optimization of the physiological status of cells to achieve substrate flexibility while controlling the product spectra. Examples of application are:
- Microbial hydrolysis for short-chain carboxylic acid production
- Dark fermentation as first stage in full anaerobic digestion
- Phosphor and nitrogen fixation in mixed microbial communities
Single-use bioreactors have been applied for a long time in the pharmaceutical industry. Various designs include reactor concepts that are especially suited for the application for processes, in which shear plays a role for the evolvement of populations. Therefore, the role of shear and the suitability of single-use rocking-motion bioreactors for the application in seed cultures and continuous processes with small reactor volumes is investigated. Examples of application are:
- Morphology development of filamentous microorganisms
- Environmental assessment of single-use bioprocess equipment
Life-cycle and techno-economic assessments of bioprocesses are also conducted beyond single-use equipment in order to decide for sustainable process routes and the overall potential of a bio-based economy. The goal is to define, create and realize smart bioproduction grids, which are optimized for the valorization of biogenic residues as drop-in solutions for existing logistic chains, while resolving hurdles for the combination of decentralized and centralized bioproduction.
Technical equipment
- parallel bioreactors for lab-scale bioprocess development up to the L-scale
- Mini-plant for fermentative and micro-aerated food processes
- various optical and chromatography-based analytical tools for metabolite and (trace-) element analysis
- lab equipment for microbial cultivation from the µL-scale in microwell plates upwards to the mL - scale in shake flasks.
Teaching profile
Teaching covers mainly, but not exclusively microbial growth, cultivation modes with mono-/ co-/ mixed cultures, mechanistic process description, scale up and scale down, bioprocess and single-cell analytics, bioreactor design - including single-use technology for bioproduction, food/ feed/ material bioproduction with aerobic and anaerobic cultures, process coupling and bioproduction networks. Teaching activities support the international bioengineering education for example in:
- Microbial biotechnology (B. Sc.)
- Fermentation technology (M. Sc.)
- Industrial bioprocesses (M. Sc.)
- Techno-economic and life-cycle assessment of bioprocesses (M. Sc.)
A special focus is put on the flipped classroom concept and challenge-based learning. Furthermore, group work in the fields of bioprocess development, monitoring and control in upstream processing and economic and environmental assessments are supported.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Bioprocess Engineering, Group leader, Smart Bioproduction Grids / Process Analytical Technologies, Technical University of Berlin
2010 → 2022
Award Date: 1 Oct 2010
Bioprocess Engineering, Ph.D., Stimulus response experiments for modelling product formation in Clostridium acetobutylicum fermentations, Technical University of Berlin
Award Date: 10 Feb 2010
Chemical Engineering, University Diploma, Study Program Chemical Engineering, Friedrich-Alexander University Erlangen-Nürnberg
1997 → 2003
Award Date: 1 Jun 2003
Keywords
- Biomedical Engineering
- Microbial bioprocess development
- Single-use bioreactor cultivation
- Single-cell analysis
- Population dynamics
- Co- and mixed cultures
- Environment
- Biogenic waste valorization
- Feedstock pre-treatment
- Biorefinery Concepts
- Process coupling
- Life cycle analysis
- Wastewater treatment
- Energy
- Anaerobic digestion/biogas
- Biofuels (ethanol, ABE, hydrogen)
- Dark fermentation
- Monitoring and control in anaerobic bioprocesses
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Collaborations from the last five years
Projects
- 1 Active
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STARBio: Single-cell Tracking Analytics for Reliable Bioprocesses
01/03/2023 → 31/12/2026
Project: Research
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Controlling Aspergillus niger morphology in a low shear-force environment in a rocking-motion bioreactor
Kheirkhah, T., Neubauer, P. & Junne, S., Jun 2023, In: Biochemical Engineering Journal. 195, 108905.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)63 Downloads (Pure) -
Effect of bioaugmentation with Paenibacillus spp. and thin slurry recirculation on microbial hydrolysis of maize silage and bedding straw in a plug-flow reactor
Menzel, T., Neubauer, P. & Junne, S., 9 Mar 2023, (E-pub ahead of print) In: Biomass Conversion and Biorefinery.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access3 Citations (Scopus) -
Membrane-free dissolved hydrogen monitoring in anaerobic digestion
Janesch, E., Marín, R. R. R., Lemoine, A., Oelßner, W., Zosel, J., Mertig, M., Neubauer, P. & Junne, S., Apr 2024, In: Journal of Environmental Chemical Engineering. 12, 2, 112103.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access -
Spatial monitoring of hydrolysis in a plug-flow bioreactor: a support for flexible operation?
Menzel, T., Neubauer, P. & Junne, S., 14 Feb 2024, In: Bioresources and Bioprocessing. 11, 1, 23.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access -
Plug-flow anaerobic digestion with multi-position sensors: The value of gradient measurement for process monitoring
Longis, M., Pereira, J. C., Högl, T. H., Neubauer, P. & Junne, S., Jun 2023, In: Biomass and Bioenergy. 173, 106803.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile3 Citations (Scopus)78 Downloads (Pure)