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Abstract
Most methods for metagenomic binning rely solely on the local properties of the individual contigs. Because of this, these techniques are unable to take advantage of the connections between contigs as established by the assembly graph. In this paper, we explore Graph Neural Networks (GNNs) to leverage the assembly graph when learning contig representations for metagenomic binning. We applied four different types of GNN architectures, comparing their results on real and synthetic datasets, demonstrating encouraging results and, therefore, a promising research direction to pursue and explore.
Original language | English |
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Title of host publication | The 2023 ICML Workshop on Computational Biology |
Number of pages | 7 |
Publication date | 2023 |
Article number | 81 |
Publication status | Published - 2023 |
Event | The 2023 ICML Workshop on Computational Biology - Honolulu, United States Duration: 29 Jul 2023 → 29 Jul 2023 https://icml-compbio.github.io/index.html |
Workshop
Workshop | The 2023 ICML Workshop on Computational Biology |
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Country/Territory | United States |
City | Honolulu |
Period | 29/07/2023 → 29/07/2023 |
Internet address |
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Data Science meets Microbial Dark Matter
Albertsen, M., Hose, K., Nielsen, T. D., Lamurias, A. & Mølvang Dall, S.
Villum Fonden, Danish E-infrastructure Cooperation
01/01/2021 → 31/12/2023
Project: Research