Characterization of 151 SNPs for population structure analysis of the endangered Tatra chamois (Rupicapra rupicapra tatrica) and its relative, the Alpine chamois (R. r. rupicapra)

Ditte Demontis; Sylwia D. Czarnomska; Petra Hajkova; Barbora Zemanova; Josef Bryja; Volker Loeschcke; Cino Pertoldi

doi:10.1016/j.mambio.2010.10.004

Characterization of 151 SNPs for population structure analysis of the endangered Tatra chamois (Rupicapra rupicapra tatrica) and its relative, the Alpine chamois (R. r. rupicapra)

Ditte Demontis, Sylwia D. Czarnomska, Petra Hajkova, Barbora Zemanova, Josef Bryja, Volker Loeschcke, Cino Pertoldi

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

2 Citationer (Scopus)

Abstract

We present 151 SNPs (single nucleotide polymorphisms) identified in Tatra and Alpine chamois individuals after genotyping with the Bovine SNP50 Genotyping BeadChip (Illumina (R)). Population structure analysis based on the identified 151 SNPs as well as a subset of 48 SNPs were able to give information about geographic origin of each individual making the markers suitable for future evaluation and monitoring of the genetic status of the Tatra and Alpine chamois. Our study demonstrates how it is possible to quickly identify informative SNPs in non-model organisms based on a SNP marker panel created for a related domestic species. (C) 2010 Deutsche Gesellschaft fur Saugetierkunde. Published by Elsevier GmbH. All rights reserved.

Originalsprog	Udefineret/Ukendt
Tidsskrift	Mammalian Biology
Vol/bind	76
Udgave nummer	5
Sider (fra-til)	644-645
Antal sider	2
ISSN	1616-5047
DOI	https://doi.org/10.1016/j.mambio.2010.10.004
Status	Udgivet - 2011
Udgivet eksternt	Ja

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10.1016/j.mambio.2010.10.004

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Citationsformater

@article{d4d1963a2f57488699b93f9a152669e1,

title = "Characterization of 151 SNPs for population structure analysis of the endangered Tatra chamois (Rupicapra rupicapra tatrica) and its relative, the Alpine chamois (R. r. rupicapra)",

abstract = "We present 151 SNPs (single nucleotide polymorphisms) identified in Tatra and Alpine chamois individuals after genotyping with the Bovine SNP50 Genotyping BeadChip (Illumina (R)). Population structure analysis based on the identified 151 SNPs as well as a subset of 48 SNPs were able to give information about geographic origin of each individual making the markers suitable for future evaluation and monitoring of the genetic status of the Tatra and Alpine chamois. Our study demonstrates how it is possible to quickly identify informative SNPs in non-model organisms based on a SNP marker panel created for a related domestic species. (C) 2010 Deutsche Gesellschaft fur Saugetierkunde. Published by Elsevier GmbH. All rights reserved.",

author = "Ditte Demontis and Czarnomska, {Sylwia D.} and Petra Hajkova and Barbora Zemanova and Josef Bryja and Volker Loeschcke and Cino Pertoldi",

year = "2011",

doi = "10.1016/j.mambio.2010.10.004",

language = "Udefineret/Ukendt",

volume = "76",

pages = "644--645",

journal = "Mammalian Biology",

issn = "1616-5047",

publisher = "Elsevier",

number = "5",

}

Demontis, D, Czarnomska, SD, Hajkova, P, Zemanova, B, Bryja, J, Loeschcke, V & Pertoldi, C 2011, 'Characterization of 151 SNPs for population structure analysis of the endangered Tatra chamois (Rupicapra rupicapra tatrica) and its relative, the Alpine chamois (R. r. rupicapra)', Mammalian Biology, bind 76, nr. 5, s. 644-645. https://doi.org/10.1016/j.mambio.2010.10.004

Characterization of 151 SNPs for population structure analysis of the endangered Tatra chamois (Rupicapra rupicapra tatrica) and its relative, the Alpine chamois (R. r. rupicapra). / Demontis, Ditte; Czarnomska, Sylwia D.; Hajkova, Petra et al.
I: Mammalian Biology, Bind 76, Nr. 5, 2011, s. 644-645.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › peer review

TY - JOUR

T1 - Characterization of 151 SNPs for population structure analysis of the endangered Tatra chamois (Rupicapra rupicapra tatrica) and its relative, the Alpine chamois (R. r. rupicapra)

AU - Demontis, Ditte

AU - Czarnomska, Sylwia D.

AU - Hajkova, Petra

AU - Zemanova, Barbora

AU - Bryja, Josef

AU - Loeschcke, Volker

AU - Pertoldi, Cino

PY - 2011

Y1 - 2011

N2 - We present 151 SNPs (single nucleotide polymorphisms) identified in Tatra and Alpine chamois individuals after genotyping with the Bovine SNP50 Genotyping BeadChip (Illumina (R)). Population structure analysis based on the identified 151 SNPs as well as a subset of 48 SNPs were able to give information about geographic origin of each individual making the markers suitable for future evaluation and monitoring of the genetic status of the Tatra and Alpine chamois. Our study demonstrates how it is possible to quickly identify informative SNPs in non-model organisms based on a SNP marker panel created for a related domestic species. (C) 2010 Deutsche Gesellschaft fur Saugetierkunde. Published by Elsevier GmbH. All rights reserved.

AB - We present 151 SNPs (single nucleotide polymorphisms) identified in Tatra and Alpine chamois individuals after genotyping with the Bovine SNP50 Genotyping BeadChip (Illumina (R)). Population structure analysis based on the identified 151 SNPs as well as a subset of 48 SNPs were able to give information about geographic origin of each individual making the markers suitable for future evaluation and monitoring of the genetic status of the Tatra and Alpine chamois. Our study demonstrates how it is possible to quickly identify informative SNPs in non-model organisms based on a SNP marker panel created for a related domestic species. (C) 2010 Deutsche Gesellschaft fur Saugetierkunde. Published by Elsevier GmbH. All rights reserved.

U2 - 10.1016/j.mambio.2010.10.004

DO - 10.1016/j.mambio.2010.10.004

M3 - Tidsskriftartikel

SN - 1616-5047

VL - 76

SP - 644

EP - 645

JO - Mammalian Biology

JF - Mammalian Biology

IS - 5

ER -