Description
Accession Number: GSE10638
Platform:
GPL6177: Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version)
Organism: Arabidopsis thaliana
Published on 2008-11-24
Summary:
Testing the consequences of the absence of the chromatin-associated HMGB1 protein on the transcriptome in Arabidopsis. Keywords: Comparison of mutant and wildtype samples.
Overall Design:
Four replicate RNA extractions were performed of each genotype using independent pools of plants. hmgb1#1 (Cy5) vs. Col-0#1 (Cy3) Col-0#2 (Cy5) vs. hmgb1#2 (Cy3) dye-swap hmgb1#3 (Cy5) vs. Col-0#3 (Cy3) Col-0#5 (Cy5) vs. hmgb1#4 (Cy3) dye-swap Samples were hybridized in two dye-swaps. The data were normalized over all 4 hybridizations to obtain one, single log-ratio(Sample/Reference). The raw data files of all four of the hybridizations are attached to the Sample.
Contact:
Name: Wouter Van Delm
Organization: Flanders Institute for Biotechnology (VIB)
Deparment: Nucleomics Core
Address: Herestraat 49 Box 816 Leuven Belgium
Email: Nucleomics.Bioinformatics@vib.be
Phone: +32(0)16 37 31 26
Organization: Agilent Technologies
Address: Palo Alto CA 94304 USA
Email: cag_sales-na@agilent.com
Phone: 877-424-4536
Web-Link: www.agilent.com
Platform:
GPL6177: Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version)
Organism: Arabidopsis thaliana
Published on 2008-11-24
Summary:
Testing the consequences of the absence of the chromatin-associated HMGB1 protein on the transcriptome in Arabidopsis. Keywords: Comparison of mutant and wildtype samples.
Overall Design:
Four replicate RNA extractions were performed of each genotype using independent pools of plants. hmgb1#1 (Cy5) vs. Col-0#1 (Cy3) Col-0#2 (Cy5) vs. hmgb1#2 (Cy3) dye-swap hmgb1#3 (Cy5) vs. Col-0#3 (Cy3) Col-0#5 (Cy5) vs. hmgb1#4 (Cy3) dye-swap Samples were hybridized in two dye-swaps. The data were normalized over all 4 hybridizations to obtain one, single log-ratio(Sample/Reference). The raw data files of all four of the hybridizations are attached to the Sample.
Contact:
Name: Wouter Van Delm
Organization: Flanders Institute for Biotechnology (VIB)
Deparment: Nucleomics Core
Address: Herestraat 49 Box 816 Leuven Belgium
Email: Nucleomics.Bioinformatics@vib.be
Phone: +32(0)16 37 31 26
Organization: Agilent Technologies
Address: Palo Alto CA 94304 USA
Email: cag_sales-na@agilent.com
Phone: 877-424-4536
Web-Link: www.agilent.com
| Date made available | 2008 |
|---|---|
| Publisher | Gene Expression Omnibus |